Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 590 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 543 / 2e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G36930 535 / 6e-170 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 523 / 2e-163 transmembrane receptors;ATP binding (.1.2) AT5G44510 499 / 3e-156 TAO1 target of AVRB operation1 (.1) AT5G18360 481 / 8e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 472 / 2e-147 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G49140 464 / 1e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 477 / 4e-145 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G51630 462 / 3e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G104301 [exp] 1018 / 0 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098550 [exp] 1017 / 0 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097300 [exp] 1003 / 0 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098000 [exp] 986 / 0 AT5G17680 575 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 976 / 0 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.013G097000 [exp] 971 / 0 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 965 / 0 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104901 [exp] 947 / 0 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.008G220200 [exp] 783 / 0 AT5G36930 560 / 3e-180 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003749 [exp] 787 / 0 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 756 / 0 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 652 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 650 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 632 / 0 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10019708 [exp] 597 / 0 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 572 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 549 / 9e-175 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10005171 [exp] 536 / 2e-170 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10030345 [exp] 503 / 3e-159 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G069200.1 pacid=42774383 polypeptide=Potri.019G069200.1.p locus=Potri.019G069200 ID=Potri.019G069200.1.v4.1 annot-version=v4.1 ATGGCTGCAACAAGCTCCAGATGCAACACAACCTCTCCACCCTTTTCTCCTACCCAAAATAACTGTAAATGGACATATCATGTGTTCCTGAGTTTCAGGG GTGAAGACACCCGCAAGAACTTCACTGGTCATTTATACAGTGGCTTGAGTAGATTTAAGCTTCTTGTTTTCAAGGATGATGAGAAGCTTGAGAAAGGAAA AGTGATCGCACCAGAGCTCTTAAAAGCAATTGAGCAGTCAATGTTTTCAGTCATTGTTCTTTCTAAGAACTACGCTTCTTCATCTTGGTGCTTAGATGAA CTGGCTAAGATTATAGAATGTGGTGATCAAAAAGGGCAGAAGATTTTTCCTGTGTTTTATGATGTTGAGCCGTCAGACGTGAGGAAACAAACAGGGAGCT TTCAGGATGACTTTGCAAAACATGAAGAAAAGTACAGAGAGAACATAGACAAGGTTAGAAAATGGAGGGCTGCTATGACACAGGTAGCCAATCTATCTGG ATGGACTTCGAAGAACAGGAACGAGTCAGAAATAATTGAAGAAATTGTTCAAAAGATAGATTACGAATTGAGTCAAACATTCTCAAGTGTCAGCGAAGAC TTAGTTGGAATAGATTCTCGAGTGAGAGTAGTGAGTGATATGTTATTCGGAGGACAAAATGATGTTCGCATTATTGGGATTTGTGGGATGGGTGGCATCG GTAAAAGCACCATTGCCAGAGTGGTCTACGACAAGATTAGGTGTGAATTTGAAGGTAGCTGCTTCCTTGCAAATGTCAGAGAAGGTTTTGAGAAACATGG GGCTGTTCCATTACAAAAGCAACTTCTTTCTGAGATCCTAAGGGAAAAGAGCCCAAAGATATGGGATCCAGAGAAAGGAATCGCTGAGATAAAGAACAGG CTGCAAAACAGAAAGGTGCTTGTCATTCTTGATGATGTAGATAATCTAAAACAGCTGCATTTCTTGGCTGTGGACTGGAAATGGTTTCTTCCAGGGAGCC GAATAATCATAACAAGTAGGGATAAGAATTTGTTGAGTACACATGCAGTGGATGGTATATATGAGGCCGAGGAGTTAAATGATGATGATGCTCTTGTCCT ATTGAGTCGAAAAGCATTCAAAAAAGACCAACCAATAGAAGGTTACTGGGAGCTATGCAAAAGTGTTCTAGGCCATGCCAGGGGCCTTCCATTAGCTGCT AGAGTCTTGGGTTCTTCTCTCTGTGGCAGAAGCATGGATTTTTGGGAAAGTTTCATTAAGAGACTAAATGAAATTCCAAATAGGGACGTCATGGCTGTTC TAAAACTAAGTTTTGATGGATTAGAGGAACTAGAGAAGAAAATATTCTTAGATATTGCTTGTTTCTTTAAGGGGATGAATAAAGATCAAGTAACAAGGAT ACTTAACCAATGTGGTTTTCATGCAAATTATGGAATACAAATTCTCCAAGATAAATCTCTCATATGTGTGTCAAATGATACATTGTCGATGCATGATTTG TTACAAGCAATGGGTAGAGAAGTTGTTCGTCAAGAATCTACTGCAGAGCCGGGAAGGCGTAGTAGGTTATGGGCAAGTAAAGATGTCTTTCATGTGCTCG GGAAAAACACGGGGACAGAAGAAATAGAAAGCATAGCCCTGGACTGGCCTAACCCAGAAGATGTGGAAGGCACAATGCTAAAAACCAAAAGGTCAGCATG GAACACGGGAGTCTTCTCAAAAATGAGCAGGCTAAGGTTGCTCAGAATTCGTAATGCATGCTTTGATTCAGGACCGGAATATCTGTCTAACGAGTTACGG TTTCTTGAATGGCGTAATTATCCCTCAAAATCTTTGCCATCCTGTTTCCAGCCAGAAAATCTTGTTGAAGTTCACATGTGTTACAGTAACTTGCGACAAC GTTGGCTTGGAAATAAGCAGATTCTTGACAGTTTGAAAGTCGTTGATCTCAGTTACTCCGAATATTTAACCAAGACCCCTGATTTCACTGGGATTCCGAA TCTTGAGAGGTTGATTCTAAAGGGTTGTCGAAGGCTGTCTGAGGTCCATTCATCAATTGGTCATCACAATAAGCTGATTTATGTGAATTTAATAGACTGC AAAAGTCTTACAAGTCTCCCAAGTAGAATAAGTGGTTTAAAGTTGCTAGAAGAACTTCATCTCTCTGGCTGCTCAAAACTGAAAGAGTTTCCAGAAATTG TGGGAAATAAAAAATGTTTGCGGAAGCTTTGTTTAGATCAGACTAGCATTGAAGAACTGCCCCTATCAATTCAATATTTGGTTGGCCTAATTTCATTGAG CCTCAAAGACTGTAAGAAACTTGCTCGTCTTCCAAGCAGCATAAATGGTTTAAAGTCCCTCAAAACTCTCCATCTATCTGGCTGCTCTGAACTTGATAAT CTGCCAGAGAATTTGGGGCAGTTAGAATGTTTGAACGAGCTTGATGTTAGTGGAACTGCCATAAGAGAACCACCAGTCTCCATTTTTTCCCTGAAGAATC TTAAAAAATTGTCTTTTCATGGATGCGCGGAATCTTCGAGGTCCACCACTAATATTTTGCAGCGTTTAATGTTTCCACTGATGCCAAGAAAAAGAGCAAC CTCAACAACTCTGGTGTTACCTTCTTTATCAGGTTTATCTTCTCTAACAAAGCTGGATCTAAGTAATTGCAATCTTGGGGAAGGAGCGGTACCCAATGAT ATTGGCTACTTGTCCTCCTTAAGGCATTTGGATCTAAGCTGTAATAAATTTGTTAGCCTGCCTACAAGCATCGATCAACTTTCAGGACTTCAATTTCTTC GCATGGAAGATTGCAAGATGCTTCAATCACTCCCTGAACTTCCATCAAACCTCGAAGAGTTCAGAGTCAACGGTTGTACATCATTAGAAAAAATGCAATT TTCAAGAAAGCTATGCCAATTGAATTATCTGAGATATCTCTTTATAAATTGCTGGAGATTGTCTGAGAGTGATTGCTGGAATAACATGTTTCCTACCCTG CTCAGAAAATGCTTTCAGGGCCCTCCTAATTTAATCGAGTCATTTAGTGTCATTATTCCTGGAAGTGAAATTCCAACTTGGTTCAGCCATCAGAGTGAGG GATCATCAGTGAGTGTACAAACACCTCCCCATTCCCATGAAAATGATGAGTGGTTGGGATATGCTGTATGTGCCTCTTTGGGATATCCTGATTTCCCACC TAACGTATTTCGAAGTCCTATGCAATGTTTTTTTAACGGCGATGGAAATGAGTCGGAAAGCATTTATGTGAGATTGAAACCGTGTGAGATTTTGTCAGAT CACCTTTGGTTTCTGTATTTCCCTTCTCGTTTCAAAAGATTCGACCGTCACGTTAGGTTCAGGTTTGAAGACAACTGTTCTCAAACAAAGGTGATCAAGT GTGGAGTTCGTCTTGTATACCAGCAAGATGTTGAAGAGTTAAACCGGATGACAAATCTATATGAGAACTCAACTTTCGAGGGTGTTGATGAATGTTTTCA AGAATCTGGTGGCGCCCTGGTGAAACGACTCGGTCATACTAATGATGTTGGAGAGGCCAGCGGAAGTGTTAGTTCTGATGAGCAGCCCCCCACCAAAAAG CTGAAACAAATATAG
AA sequence Show only first row Show all	>Potri.019G069200.1 pacid=42774383 polypeptide=Potri.019G069200.1.p locus=Potri.019G069200 ID=Potri.019G069200.1.v4.1 annot-version=v4.1 MAATSSRCNTTSPPFSPTQNNCKWTYHVFLSFRGEDTRKNFTGHLYSGLSRFKLLVFKDDEKLEKGKVIAPELLKAIEQSMFSVIVLSKNYASSSWCLDE LAKIIECGDQKGQKIFPVFYDVEPSDVRKQTGSFQDDFAKHEEKYRENIDKVRKWRAAMTQVANLSGWTSKNRNESEIIEEIVQKIDYELSQTFSSVSED LVGIDSRVRVVSDMLFGGQNDVRIIGICGMGGIGKSTIARVVYDKIRCEFEGSCFLANVREGFEKHGAVPLQKQLLSEILREKSPKIWDPEKGIAEIKNR LQNRKVLVILDDVDNLKQLHFLAVDWKWFLPGSRIIITSRDKNLLSTHAVDGIYEAEELNDDDALVLLSRKAFKKDQPIEGYWELCKSVLGHARGLPLAA RVLGSSLCGRSMDFWESFIKRLNEIPNRDVMAVLKLSFDGLEELEKKIFLDIACFFKGMNKDQVTRILNQCGFHANYGIQILQDKSLICVSNDTLSMHDL LQAMGREVVRQESTAEPGRRSRLWASKDVFHVLGKNTGTEEIESIALDWPNPEDVEGTMLKTKRSAWNTGVFSKMSRLRLLRIRNACFDSGPEYLSNELR FLEWRNYPSKSLPSCFQPENLVEVHMCYSNLRQRWLGNKQILDSLKVVDLSYSEYLTKTPDFTGIPNLERLILKGCRRLSEVHSSIGHHNKLIYVNLIDC KSLTSLPSRISGLKLLEELHLSGCSKLKEFPEIVGNKKCLRKLCLDQTSIEELPLSIQYLVGLISLSLKDCKKLARLPSSINGLKSLKTLHLSGCSELDN LPENLGQLECLNELDVSGTAIREPPVSIFSLKNLKKLSFHGCAESSRSTTNILQRLMFPLMPRKRATSTTLVLPSLSGLSSLTKLDLSNCNLGEGAVPND IGYLSSLRHLDLSCNKFVSLPTSIDQLSGLQFLRMEDCKMLQSLPELPSNLEEFRVNGCTSLEKMQFSRKLCQLNYLRYLFINCWRLSESDCWNNMFPTL LRKCFQGPPNLIESFSVIIPGSEIPTWFSHQSEGSSVSVQTPPHSHENDEWLGYAVCASLGYPDFPPNVFRSPMQCFFNGDGNESESIYVRLKPCEILSD HLWFLYFPSRFKRFDRHVRFRFEDNCSQTKVIKCGVRLVYQQDVEELNRMTNLYENSTFEGVDECFQESGGALVKRLGHTNDVGEASGSVSSDEQPPTKK LKQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G069200 [exp]	0	1
AT5G18470			Curculin-like (mannose-binding...		Potri.005G015300 [exp]	6.92	0.8559
					Potri.005G240500 [exp]	10.39	0.8402
AT5G01980			RING/U-box superfamily protein...		Potri.006G112100 [exp]	12.60	0.8204
AT3G52420		ATOEP7	outer envelope membrane protei...		Potri.017G127350 [exp]	15.39	0.7219
AT5G36930			Disease resistance protein (TI...		Potri.019G021024 [exp]	19.39	0.8754
AT5G36930			Disease resistance protein (TI...		Potri.006G283600 [exp]	22.29	0.8764
AT4G02550			unknown protein		Potri.001G157750 [exp]	23.55	0.8575
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014374 [exp]	23.66	0.8545
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145566 [exp]	23.95	0.8591
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015600 [exp]	24.73	0.7552

Compare expression of checked genes

Potri.019G069200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.