Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 711 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 593 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 567 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 543 / 9e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 541 / 1e-169 TAO1 target of AVRB operation1 (.1) AT4G16890 542 / 7e-169 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46450 533 / 2e-167 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 535 / 2e-165 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27170 532 / 2e-164 transmembrane receptors;ATP binding (.1.2) AT2G14080 526 / 1e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069600 [exp] 2172 / 0 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 2125 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 2085 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 1847 / 0 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 1844 / 0 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 1568 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070479 [exp] 1278 / 0 AT5G17680 285 / 2e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 1270 / 0 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 754 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 755 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 671 / 0 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 617 / 0 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 595 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 589 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026201 [exp] 587 / 0 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 580 / 0 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10005588 [exp] 567 / 2e-179 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 552 / 2e-173 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 518 / 6e-161 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G069500.6 pacid=42773124 polypeptide=Potri.019G069500.6.p locus=Potri.019G069500 ID=Potri.019G069500.6.v4.1 annot-version=v4.1 ATGGTATCTTCATCTGCTGTTGCTCAAAAATGGAAGTATGACGTGTTTCTTAGTTTCAGAGGTAAGGATACGCGCGATAATTTTGTCAGCCATCTCCGTG ATGCTCTGTGTCGTAAACAAATCAAGACCTTCATAGACGACAAACTTGAAAGGGGAGAAGAAATTACGGGTGCACTTTTGAGAACAATTGAAGAATCGAG AATTTCAGTGATAATATTCTCAAGAAACTATGCATCTTCTCCATGGTGTGTGGATGAACTAGTGAAGATACTTGAATGCAAGAAGGCATACGGGCAGATT GTTTTACCAGTTTTCTATCATGTGGACCCGTCCGATGTTGACCAACAGACAGGGAGTTTTGGGAATGCGTTTGCTGAGCTTGAAAGAAATTTTAAGCAGA AGATGGACAAGGTTCCACGGTGGAGAGCTGACTTAACAAGTGCTGCCAATATATCCGGATGGGATTCACAGGTTACTAGGCCTGAGTCGAGTCTCGTGGA ACAAATTGTGCATCATATTTTGAAGAAATTGAATTATGCATCCTCAAGTGATTTGAAGGGCCTGGTTGGAATGGATTCACGTATGGAGCAAATCGAAGCC TCATTATGCACAAAGTTACCGGAGTTTTGTTTTGTAGGAATTTGGGGCATGGGTGGTACTGGTAAGACAACCATTGCTGGAGAGATTTTCAACAAGATCG CAAGGGAATATGAAGGTCACTATTTTCTTGCAAATGTGAGGGAATCAGAAAAGAATGGAGGATTATTTCGTATAAGAGATGAACTTTTCTCTAAAATAAC AGAGGAAGAAAATCTACATATTCGCACTCCACGTATTGGACACCCTTTCATTAAAGACAGGATCTGCCGTAAAAAGATTCTAATTGTTTTCGATGATGTG AATGATGTAGATCAAATTGAAATGTTACTTGGAGGATGTGAGTCGTTTGGTCCAGGAAGTAGAATTATCCTAACTTCTAGAGATAAACAGGTCCTTAAGA AATATGCAGACAAAATATTTGAGGTTGAGGGACTGAATCACCGGGAAGCTCTTCATCTCTTTAGTTTGCATGCATTTAAGGATAACCAGCCCCCATACAA TTATATGGAGCTGTCTGTGAGGGCAATAAATTACGCTAAAGGGAATCCATTAGCTCTTAAAGTCTTAGGTTCCTCTCTATTTGGCAGAACGACTAAAGAA TGGGAAAGTGCATTGAACAAGGTTGAAAAACTAACTCGGCAAAAAGTTCATAGCGTGTTGAGAATAAGTTATGAAGCACTTGATAGTGAAGAGAAGAGTA TATTTCTGGACATTGCATGTTTCTTTAGAGGGCATCGAGTTGATTTTGTAAAGCGGATACTAGATGGCTGCGGTTTCAAAACAGATATTGGATTTAGTGT TCTCATTGACAGGTGTCTCATTAAAATTTCAGATGACAAGGTTGAAATGCATGATCTTTTGCAAGAAATGGCCCATGATGTTGTTCGAAAAGAATCTCTT GACGAGCTAGGAGGACAAAGCAGATTGTGGAGTCCTAAAGATGTATATCAAGTGTTGACCAATAATCTGGGAACTGGAAAAGTTGAAGGGATATTTTTGG ATGTTTCAAAAATAAGAGAAATTGAGTTGAGTTCTACAGCCTTGGGAAGGATGTATAAACTTAGACTGCTAAAAATTTATAATTCTGAAGCTGGAGTTAA ATGCAGAGTGCACCTTCCTCATGGCCTCGAGTCTCTTTCCGAAGAGTTGAGGTATCTCCATTGGGATGGATACCCTTTGACATCTTTGCCTAGCAATTTT CGTCCACAGAACCTTGTTGAAATTAACCTATCATGTAGCAAGGTTAACCGACTGTGGAGAGGAGACCAGAATCTTGTCAATTTAAAAGATGTCAACCTCA GCAATTGTGAGCACATAACTTTCCTGCCAGACCTTTCGAAGGCCAGAAACCTTGAGAGATTGAATCTTCAATTCTGTACAAGTTTGGTTAAGGTTCCTTC ATCTATTCAGCATCTGGACAGGCTTGTTGATTTAGATTTGAGAGGCTGCGAAAGACTTGTCAATCTTCCCAGTAGAATTAATTCAAGTTGTCTGGAGACT CTGAACCTTTCTGGCTGTGCAAATCTCAAGAAGTGCCCAGAGACTGCAAGGAAACTGACATATTTAAATTTAAATGAGACTGCCGTTGAGGAGCTTCCCC AATCAATAGGGGAACTCAGTGGACTTGTTGCGTTGAATTTGAAGAACTGCAAACTCCTGGTGAATCTTCCAGAAAACATGTATTTGTTGACATCTCTTCT GCTTGTTGACATCTCTGGCTGCTCTTCTATCAGCAGGCTTCCTGACTTTTCGAGGAATATAAGATACTTGTACTTGAATGGAACTGCAATAGAAGAACTG CCATCTTCAATTGGTGATCTAAGGAAACTCATTTATTTAAATCTTTCCGGTTGCTCAAGTATCACAGAGTTTCCAAAGGTTTCAAATAATATAAAGGAGC TGTATTTAGATGGGACAGCAATACGAGAGATTCCCTCTTCAATAGATTGTTTGTTTGAACTTGTTGAATTGCACCTGCGAAACTGCAAACAATTTGAGAT TCTTCCAAGCAGCATCTGCACGTTGAGAAAACTGGAGAGGCTTAATCTCTCAGGTTGCCTCCAATTTAGGGATTTTCCAGAAGTTTTGGAGCCGATGGTA TGTTTGAGATATCTCTATCTAGAAGAGACACGCATAACAAAGTTGCCTTCACCGATTGGAAATCTGAAGGGACTTGCCTGCTTGGAAGTGGGAAACTGCA AATATCTAAATGACATCGAATGTTTTGTTGACTTGCAATTGTCCGAGAGATGGGTGGATTTAGATTATCTGCGTAAGCTAAATCTAGATGGTTGCCATAT ATCGGTAGTGCCAGACAGTCTTGGTTGTCTATCGTCACTGGAAGTGTTAGATCTAAGTGGAAACAATTTTAGTACTATTCCTTTAAGCATCAATAAACTC TCGGAGTTGCAATATCTAGGATTAAGGAATTGCAAGAGACTTGAATCATTACCGGAGCTTCCACCACGGCTATCAAAGTTGGATGCAGACAATTGCGAGA GTTTGAATTATCTAGGATCAAGCTCATCAACTGTAGTTAAGGGGAACATTTTTGAATTCATTTTCACTAATTGCTTGAGCTTGTGTAGGATCAATCAAAT CTTGCCGTACGCATTAAAGAAATTTCGACTTTATACCAAAAGGCTCCATCAGCTAACCGATGTTCTAGAAGGGGCATGTAGTTTCTTCCTCCCTGGAGGT GTCTCTCCGCAGTGGCTTAGCCATCAAAGTTGGGGATCTACAGTAACATGTCAGCTGTCTTCACATTGGGCTAATAGCAAGTTCTTGGGTTTCTTTCTTT GCGCTGTCATTGCATTTCATTCTTTCGGCCATAGTTTGCAAGTTAAATGCACATATCACTTCAGCAATGAGCACGGTGATAGCCATGATCTCTATTGCTA TCTCCATGGTTGGTATGATGAGAAGCGCATTGACTCAGAACACATACTCGTGGGATTTGATCCCTGCCTGGTTGCTAAAGAAGATTATATGTTTAGTGAA TACAGTGAGGTCTCAGTTGAATTCCAACTGGAAGATATAAATGGCAATCTCTTACCATTGGATCTTTGTCAAGTACATAAATGTGGGGTCCGCCTACTGT ATGAAGATGAGATACATTGCATCGACTATTATCATGATCCATTGGAAGCAATGTTCCAATGCAAGAGAGCAAGCTTGCAAGGCAAGAGAGCAAGGTTCCA AGGCATGAGTTGGGAGGATTATTCTGTCATGTGTAGGACCTACGAATTCTTGGAAGAGCCCGATGTTTCAAAAAGGGTATCTAGTTTCCGCTACCATGGA GATGTAACTCCGGAGTGGTTTAGCCATCAAAGTTGGGGATCAACAGTAACATGCCAGCTATCTTCACATTGGGCTAATAGCGAGTTCTTGGGTTTCTCTC TTTGCGCTATCATTGCATTTCATTCTTTCAAACATAGTTTGCAAGTTAAATGCACATATCACTTCCGCAATGAGCACGGTGATAGCCATGATCTCTATTG CTATCTCCATGAGGAGATTGATGAGAGGCGCATCGACTCAGATCACGTACTCGTGGGATTTGATCCCTGTTTGGTTGCCAAAGAAAAGGATATGTTTAGT GAATATAGTGAGATCGCAGTTGAATTCCAACTAGAAGATATGAACGGTAATCTCTTACCATTAGATGTTTGTCAAGTACAAGAGTGTGGAGTCCATCTAC TGGATGCCGAAGATAAAGATGCTGTGACCATGGCAGGTGTCCTCTTGATCGATATGAATTGGAAGCAGTGTTCCAAGCCAAGAGACCAGGGTTCCAAGCA TGAGATGGGATGA
AA sequence Show only first row Show all	>Potri.019G069500.6 pacid=42773124 polypeptide=Potri.019G069500.6.p locus=Potri.019G069500 ID=Potri.019G069500.6.v4.1 annot-version=v4.1 MVSSSAVAQKWKYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRTIEESRISVIIFSRNYASSPWCVDELVKILECKKAYGQI VLPVFYHVDPSDVDQQTGSFGNAFAELERNFKQKMDKVPRWRADLTSAANISGWDSQVTRPESSLVEQIVHHILKKLNYASSSDLKGLVGMDSRMEQIEA SLCTKLPEFCFVGIWGMGGTGKTTIAGEIFNKIAREYEGHYFLANVRESEKNGGLFRIRDELFSKITEEENLHIRTPRIGHPFIKDRICRKKILIVFDDV NDVDQIEMLLGGCESFGPGSRIILTSRDKQVLKKYADKIFEVEGLNHREALHLFSLHAFKDNQPPYNYMELSVRAINYAKGNPLALKVLGSSLFGRTTKE WESALNKVEKLTRQKVHSVLRISYEALDSEEKSIFLDIACFFRGHRVDFVKRILDGCGFKTDIGFSVLIDRCLIKISDDKVEMHDLLQEMAHDVVRKESL DELGGQSRLWSPKDVYQVLTNNLGTGKVEGIFLDVSKIREIELSSTALGRMYKLRLLKIYNSEAGVKCRVHLPHGLESLSEELRYLHWDGYPLTSLPSNF RPQNLVEINLSCSKVNRLWRGDQNLVNLKDVNLSNCEHITFLPDLSKARNLERLNLQFCTSLVKVPSSIQHLDRLVDLDLRGCERLVNLPSRINSSCLET LNLSGCANLKKCPETARKLTYLNLNETAVEELPQSIGELSGLVALNLKNCKLLVNLPENMYLLTSLLLVDISGCSSISRLPDFSRNIRYLYLNGTAIEEL PSSIGDLRKLIYLNLSGCSSITEFPKVSNNIKELYLDGTAIREIPSSIDCLFELVELHLRNCKQFEILPSSICTLRKLERLNLSGCLQFRDFPEVLEPMV CLRYLYLEETRITKLPSPIGNLKGLACLEVGNCKYLNDIECFVDLQLSERWVDLDYLRKLNLDGCHISVVPDSLGCLSSLEVLDLSGNNFSTIPLSINKL SELQYLGLRNCKRLESLPELPPRLSKLDADNCESLNYLGSSSSTVVKGNIFEFIFTNCLSLCRINQILPYALKKFRLYTKRLHQLTDVLEGACSFFLPGG VSPQWLSHQSWGSTVTCQLSSHWANSKFLGFFLCAVIAFHSFGHSLQVKCTYHFSNEHGDSHDLYCYLHGWYDEKRIDSEHILVGFDPCLVAKEDYMFSE YSEVSVEFQLEDINGNLLPLDLCQVHKCGVRLLYEDEIHCIDYYHDPLEAMFQCKRASLQGKRARFQGMSWEDYSVMCRTYEFLEEPDVSKRVSSFRYHG DVTPEWFSHQSWGSTVTCQLSSHWANSEFLGFSLCAIIAFHSFKHSLQVKCTYHFRNEHGDSHDLYCYLHEEIDERRIDSDHVLVGFDPCLVAKEKDMFS EYSEIAVEFQLEDMNGNLLPLDVCQVQECGVHLLDAEDKDAVTMAGVLLIDMNWKQCSKPRDQGSKHEMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G069500 [exp]	0	1
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	1.73	0.8805	PtrMTP2,Pt-MTP1.2
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	2.44	0.8677
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.006G027600 [exp]	3.46	0.8592
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	6.32	0.8732
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.002G094200 [exp]	6.32	0.8514	DREB19
AT5G17680			disease resistance protein (TI...		Potri.019G070300 [exp]	9.79	0.8567
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	10.00	0.8654
AT1G69550			disease resistance protein (TI...		Potri.004G088500 [exp]	10.24	0.8579
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.001G276600 [exp]	11.61	0.8439
AT3G07870			F-box and associated interacti...		Potri.001G396800 [exp]	12.96	0.8456

Compare expression of checked genes

Potri.019G069500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.