Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 647 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 582 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 535 / 2e-165 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27170 535 / 3e-165 transmembrane receptors;ATP binding (.1.2) AT4G16890 530 / 3e-164 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 515 / 3e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 508 / 7e-158 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46470 507 / 2e-157 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G08450 504 / 3e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 501 / 2e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070393 [exp] 2387 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 2369 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 2181 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 2088 / 0 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 2068 / 0 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070479 [exp] 1610 / 0 AT5G17680 285 / 2e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 1472 / 0 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 1376 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 721 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 688 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 624 / 0 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 572 / 0 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 567 / 3e-179 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 562 / 2e-177 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 555 / 2e-174 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018616 [exp] 548 / 1e-170 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 540 / 1e-168 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 532 / 4e-166 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014829 [exp] 501 / 3e-157 AT5G17680 441 / 1e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G069600.2 pacid=42773735 polypeptide=Potri.019G069600.2.p locus=Potri.019G069600 ID=Potri.019G069600.2.v4.1 annot-version=v4.1 ATGGCATCTTCATCTGCTGTTGCTCATAAATGGAAGTATGATGTGTTCCTTAGTTTTAGAGGCAAGGATACGCGCAATAATTTTACCAGCCATCTTTATG ATGCTTTGTGTCGTAAGAAAATCAAGACATTCATTGATGATGGACTTGAAAGAGGAGAAGAAATTACCCCTGCCCTTCTGAAAACGATTGAAGAATCAAG AATTTCTGTAGTAATTTTCTCCAAGAACTACGCATCTTCTCCGTGGTGTGTGGATGAACTGGTGAAAATACTTGAATGCAAAGAGACTTATGGGCAGATT GTTTTACCGGTCTTCTATCATGTGGACCCATCTGATGTTGATGAACAGACTGGGAGTTTTGGAAATGCATTTGCTGAGCTTGAAAAAAATTTCAAGTGGA AGATGGACAAGGTGCCAAGGTGGAGGGCTGACTTGACATACGCAGCCAGTATATCTGGATGGGATTCACAGGTTACTAGTCCGGAGTCCAAACTAGTAAG AGAAGTTGTGCAAACTATCTGGAAAAGGTTAAATCGTGCATCCCCAAGCAAATTAAGAGGTCTGGTTGGAGTACATTCACGTATTGAGAAAATCAACAAT TTACTATCTACTGTGCCATCAGATGTACACACAATAGGAATTTGGGGCATGGGTGGTATAGGCAAGACAACTATTGCGGAAGCTTTCTTCTATAGCATCT CAAGTCAATATGAAGGCTGCCACTTTCTTCCGAACATAAGGCAGGAATCAGAAAAGGGTCGATTAAATGATCTACGAGATGAACTTCTTTCTAAACTACT GGAGGAAGAAAATCTTGGCGTTGGCACACCACATATAGGACCTACTTTCATCAGGGATAGACTCTGCCAAAAGAAAGTTCTCCTTGTTTTGGATGATGTG AATGATGTACGACAATTCCAGTATTTAATTGGAGAGCGTTCGTTTGGCGAAGGAAGCGTTGTTGTTGTAACATCAAGAGACAAGCAAGTACTTAAGAATG TAGCTGATGAAATATACGAGGTTGAGGAATTAAACTCCCACGAAGCTCTTCAACTCTTTAGCTTGAATGCTTTTAAGGGAAACCACCCCCCAAAAGCTTA TATGGAGTTGTCAATCACGGCAATAAATTATGCCAAAGGGAACCCATTAGCTCTTCGAGTTTTGGGTTCCTTCTTATTCCGCAGAGAAAGACATTTTTGG GAATCTCAATTAAATAACATCGAAAGCTTTCCCGAGCTGAACATTTATGACTTGCTGAGAATAGGTTTTGATGCACTACGTGATAATAACACGAAGAGTA TATTTCTGGACATTGCATGTTTCTTTAGAGGGCATCAAGTTGATTTTGTAAAGCGGATACTAGATGGCTGCGGTTTCAAAACAGATATTGGATTTAGTGT TCTCATTGACAGGTGTCTCATTAAAATTTCAGATGACAAGGTTGAAATGCATGATCTTTTGCAAGAAATGGCCCATGAAGTTGTTCGAAAAGAATCTCTT AACGAGCTAGGAGGACAAAGCAGATTGTGGAGTCCTAAAGATGTATATCAAGTGTTGACCAATAATCAGGGAACTGGAAAAGTTGAAGGGATATTCTTGG ATGTTTCAAAAATAAGAGAAATTGAGTTGAGTTCTACTGCCTTGGAAAGGATGTATAAACTTAGACTGCTAAAAATTTATAATTCTGAAGCTGGAGTTAA ATGCAGAGTGCACCTTCCTCATGGCCTCGAGTCTCTTTCTGAAGAGTTGAGGTATCTCCATTGGGATGGATACCCTTTGACATCTTTGCCTAGCAATTTT CGTCCACAGAACCTTGTTGAAATTAACCTATCATGTAGCAAGGTTAACCAACTGTGGAGAGGAGACCAGAATCTCGTCAATTTAAAAGATGTCAACCTCA GCAATTGCGAGCACATAACTTTCATGCCAAACCTTTCAAAGGCCAGAAACCTTGAGAGATTGAATCTTCAATTCTGTACAAGTTTGGTTAAGTTTCCTTC ATCTGTTCAGCATCTGGACAAGCTTGTTGATTTAGATTTGAGAGGCTGCAAAAGACTAATCAATCTTCCCAGTAGATTTAATTCAAGTTTTCTGGAGACT CTGAACCTTTCTGGTTGTTCAAATATCAAGAAGTGCCCAGAGACTGCAAGGAAACTGACATATTTAAATTTAAATGAGACTGCTGTTGAAGAGCTTCCCC AATCAATTGGGGAACAAAGTGGACTTGTTGCGTTGAATTTGAAAAACTGCAAACACCTGGTTAATCTTCCAGAAAACATTTATTTGTTGAAATCTCTTCT CATAGCTGACTTCTCTGGCTGCTCATCTATCAGCAGGCTTCCTGATTTTTCGAGGAATATAAGATACTTGTACTTGAATGGAACTGCAATAGAAGAACTG CCATCTTCAATTGGTGGTCTAAGGGAACTTATTTATTTAGATCTAGTTGGCTGCAACTTGCTAAAGAATCTGCCGAGTGCGGTTTCTAAGTTGGGATGCC TTAAAAAACTTGATCTTTCCGGTTGCTCAAGTGTCACGGAGTTTCCAAAGGTTTCTAATACTATAAAGGAGCTGTATTTAAATGGGACAGCAATACGAGA GATTCCCTCTTCAATAGAATGTTTGTTTGATCTTGCTGAATTGCACCTGCGAAACTGCAAACAATTTGAGATTCTTCCAAGCAGCATCTGCAAGTTGAGA AAACTGGAGAGGCTTAATCTCTCAGGTTGCGTCCAATTTCGGGATTTTCCAGAAGTTTTGGAGCCGATGGTATGTTTGAGATATCTCTATTTAGAACAGA CAAGCATAACAGAGTTGCCTTCACCGATTGGAAATCTGATGGGACTTGCCTGCTTGGAAGTGGGAAACTGCAAATATCTAAAAGACATCGAATGTTTTGT TGACTTGCAATTGCCCGAGAGATGCGTGGATTTAGATTCTTTGCGTAAGCTAAATCTAGATGGTTGCAGTCTATCGGAAGTGCCGGACAGTCTTGGTCGT TTTTCGTCACTAGAAGTGTTAGAACTAAGTGGAAACAATTTTCAGACTATACCTATAAGCATCAATAAACTCTTTGAGTTGCAATATCTCGGATTAAGGA ATTGCACGAGACTTGAATCATTACCGGAGCTTCCACCACGGCTATCAAAGTTGGATGCAGACAATTGCGAGAGTTTGCATTATCTAGTATCAAGCTCATC AACTGTAGTTGAGGGGAACATTTTTGAATTCATTTTCACTAATTGCTCGAGATCGCGTTGGTTCAATCAAATCTTGGCGTACTCATTATTGAAATTTCAA CTTTACACCAAAAGGTTATACCATCAGCTGCCCGATGTTCCAGAAGGGGCATGTAGTTTCTGCCTCCCTGCAAATGCGACTCCGGAGTGGTTTAGCCATC AAAGTTGGGGATCTACAGTAACATTCCAGCTATCTTCACATTGGGCTAATAGCCAGTTCTTGGGTTTCTCTCTTTGCGCTGTCATTGCATTTCATTCTTT CGGCCATAGTTTGCAAGTTAAATGCACATATCACTTCAGCAATGAGCACGGTGATAGCCATGATCTCTATTGCTATCTCCATGGTTGGTATGATGAGAAG CGCATTGACTCAGAACACATACTCGTGGGATTTGATCCCTGCCTGGTTGCTAAAGAAGATTATATGTTTAGTGAATACAGTGAGGTCTCAGTTGAATTCC AACTGGAAGATATAAAAGGCAATCTCTTACCATTGGATCTTTGTCAAGTACATAAATGTGGGGTCCGCCTACTGTATGAAGATGAGATACATCCCTTTGA TTTGATCATGCCAGGCTCCTCTCGTTTTCATCCTCTGGAGCGAGATGGATTGGAAGCAAGGTTCCAAGCCAAGAGAGCAAGGTTCCAAGCCAATAGAGGG GAGGATTCTTCTATCATGCGTAGGACGTATGAATTATTGGATTATGAACTTTATTCCGAAAGGTTCAGATTACCCCGGCATGTGGAGGCATCTAGTTTCT ACCTTCTTGGAGATGTGAGTCCGGAGTGGTTTAGCCATCAAAGTTGGGGATCTATAGTAACATTCCAGCTATCTTCGTATCGTGATAGCAGCGAGTTCTT GGGTTTCTGTCTTTGCGCTGTCATTGCATCTTATTCTTTCAATCCTGATTTGGTAGTTAAATGCACATATCACTTCCGCAATGAGCACGGTGATAGCCAT GATCTCTATTGCTATCTCCATGAGAAGTTTGATGAGAGGTGCATCTACTCAGATCTCATATTTGTGGGATTTGATCCCTGTTTGGTTGTCAAAGAAAAGG ATATGTTTAGTGAATACAGTGAGGTCTCAGTTGAATTCCAACCAGAAGATTTTTACGGCAATCTCTTCCCATTAGATTGTTGTCAAGTGGTTGAGTGTGG GGTTCGTGTATTGCAATGA
AA sequence Show only first row Show all	>Potri.019G069600.2 pacid=42773735 polypeptide=Potri.019G069600.2.p locus=Potri.019G069600 ID=Potri.019G069600.2.v4.1 annot-version=v4.1 MASSSAVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITPALLKTIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQI VLPVFYHVDPSDVDEQTGSFGNAFAELEKNFKWKMDKVPRWRADLTYAASISGWDSQVTSPESKLVREVVQTIWKRLNRASPSKLRGLVGVHSRIEKINN LLSTVPSDVHTIGIWGMGGIGKTTIAEAFFYSISSQYEGCHFLPNIRQESEKGRLNDLRDELLSKLLEEENLGVGTPHIGPTFIRDRLCQKKVLLVLDDV NDVRQFQYLIGERSFGEGSVVVVTSRDKQVLKNVADEIYEVEELNSHEALQLFSLNAFKGNHPPKAYMELSITAINYAKGNPLALRVLGSFLFRRERHFW ESQLNNIESFPELNIYDLLRIGFDALRDNNTKSIFLDIACFFRGHQVDFVKRILDGCGFKTDIGFSVLIDRCLIKISDDKVEMHDLLQEMAHEVVRKESL NELGGQSRLWSPKDVYQVLTNNQGTGKVEGIFLDVSKIREIELSSTALERMYKLRLLKIYNSEAGVKCRVHLPHGLESLSEELRYLHWDGYPLTSLPSNF RPQNLVEINLSCSKVNQLWRGDQNLVNLKDVNLSNCEHITFMPNLSKARNLERLNLQFCTSLVKFPSSVQHLDKLVDLDLRGCKRLINLPSRFNSSFLET LNLSGCSNIKKCPETARKLTYLNLNETAVEELPQSIGEQSGLVALNLKNCKHLVNLPENIYLLKSLLIADFSGCSSISRLPDFSRNIRYLYLNGTAIEEL PSSIGGLRELIYLDLVGCNLLKNLPSAVSKLGCLKKLDLSGCSSVTEFPKVSNTIKELYLNGTAIREIPSSIECLFDLAELHLRNCKQFEILPSSICKLR KLERLNLSGCVQFRDFPEVLEPMVCLRYLYLEQTSITELPSPIGNLMGLACLEVGNCKYLKDIECFVDLQLPERCVDLDSLRKLNLDGCSLSEVPDSLGR FSSLEVLELSGNNFQTIPISINKLFELQYLGLRNCTRLESLPELPPRLSKLDADNCESLHYLVSSSSTVVEGNIFEFIFTNCSRSRWFNQILAYSLLKFQ LYTKRLYHQLPDVPEGACSFCLPANATPEWFSHQSWGSTVTFQLSSHWANSQFLGFSLCAVIAFHSFGHSLQVKCTYHFSNEHGDSHDLYCYLHGWYDEK RIDSEHILVGFDPCLVAKEDYMFSEYSEVSVEFQLEDIKGNLLPLDLCQVHKCGVRLLYEDEIHPFDLIMPGSSRFHPLERDGLEARFQAKRARFQANRG EDSSIMRRTYELLDYELYSERFRLPRHVEASSFYLLGDVSPEWFSHQSWGSIVTFQLSSYRDSSEFLGFCLCAVIASYSFNPDLVVKCTYHFRNEHGDSH DLYCYLHEKFDERCIYSDLIFVGFDPCLVVKEKDMFSEYSEVSVEFQPEDFYGNLFPLDCCQVVECGVRVLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G069600 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.019G070479 [exp]	1.41	0.9470
AT5G17680			disease resistance protein (TI...		Potri.019G070300 [exp]	5.74	0.8583
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.007G058500 [exp]	8.36	0.7362
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Potri.005G139800 [exp]	8.66	0.7748
AT4G31980			unknown protein		Potri.003G208300 [exp]	10.24	0.8323
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.010G250800 [exp]	10.58	0.7716	ACA9.1
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.011G070900 [exp]	10.90	0.7843	Pt-TPS7.1
AT5G06740			Concanavalin A-like lectin pro...		Potri.011G146500 [exp]	11.83	0.8337
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.005G032000 [exp]	12.12	0.8075
AT5G07610			F-box family protein (.1)		Potri.013G065500 [exp]	14.00	0.7884

Compare expression of checked genes

Potri.019G069600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.