Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 481 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 402 / 1e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 371 / 4e-111 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G51560 377 / 3e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 373 / 4e-108 disease resistance protein (TIR-NBS-LRR class) (.1) AT2G17050 370 / 1e-107 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G19520 374 / 2e-107 disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 367 / 1e-106 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 368 / 2e-106 transmembrane receptors;ATP binding (.1.2) AT5G40060 353 / 5e-104 Disease resistance protein (NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070565 [exp] 2523 / 0 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 2090 / 0 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 2020 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 1946 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 1833 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070479 [exp] 1424 / 0 AT5G17680 285 / 2e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 1048 / 0 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 1016 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070350 [exp] 548 / 0 AT5G45200 152 / 3e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 462 / 7e-143 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 423 / 7e-127 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041078 [exp] 407 / 2e-125 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 403 / 2e-121 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 397 / 5e-118 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 394 / 1e-115 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005588 [exp] 383 / 5e-113 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 377 / 2e-110 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 369 / 9e-108 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 361 / 2e-105 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G070001.2 pacid=42773078 polypeptide=Potri.019G070001.2.p locus=Potri.019G070001 ID=Potri.019G070001.2.v4.1 annot-version=v4.1 ATGGGTGGTATAGGCAAGACAACTATCGCTGGAGCTTTCTACGATAGCTTCTCAAGTCAATATGAAGGCCACCACTTTCTTCAGAACATAAGGCAGGAAT CAGAAAAGGGTCGATTAAATGATCTAAGAGATGAACTTCTTTCTAAACTACTGGAGGAACAAAATCTTCGCGTTGGCACACCACATATACCTACTTTCAT CAGGGATAGACTCTGCCAAAAGAAAGTTCTCCTTGTTTTGGATGATGTGAATGATGTACGACAATTCCAGCATTTAATTGAAGAGCGTTCGTTTGGTGAA GGAAGCGTTGTTGTTATCACATCAAGAGACAAGCAAGTACTTAAGAATGTAGTTGATGAAATATACGAGGTTGAGGAATTAAATTCCCACGAAGCTCTTC AACTCTTTAGCTTGAATGCTTTTAAGGGAAACCAGCCCCCAAAAGCTTATATGGAGTTGTCAATCACGGCAATAAATTATGCCAAAGGGAACCCATTAGC TCTTCAAGTTTTGGGTTCCTTCTTATTTGGCAGAGAAAGATATTTCTGGGAATCTCAATTAAATGAGATTGAAAGCTTTCCTGAGCTGAATATTTATGAC TTGCTGAGAATAGGCTTTGATGCACTACGTGATCATAACACGAAGAGTATATTTCTCGACATTGCATGTTTCTTTAGAGGGCATCGAGTTGATTTTGTAA AGCGAATACTAGATGGCTGCGGTTTCAAAACAGATATTGGATTTAGTGTTCTCATTGACAGGTGTCTCATTAAAATTTCAGATGACAAGATTGAAATGCA TGATCTTTTGCAAGAAATGGCCCATGAAGTTGTTCGGAAAGAATCTCTTGACGAGCTAGGAAGACAGAGTAGATTGTGGAGTCCTAAAGATGTATATCAA GTGTTGACCAATAATCTGGGAACTGGAAAAGTTGAAGGGATATTCTTGGATGTTACTAAAATAAGAGAAATTGAGTTGAGTTCTACAGCCTTGGAAAGGA TGTATAAACTTAGACTGCTAAAAATTTATAATTCTGAAGCTGGAGTTAAATGCAGAGTGCACCTTCCTCGTGGCCTCGAGTATCTTTCTGAAGAGTTGAG GTATCTCCATTGGGATGGATACCCTTTGACATCTTTGCCTAGCAAGTTTTGTCCACAGAACCTTGTTGAACTTAGCCTGTCATCTAGCAAAGTTAAGCAA CTATGGAGAGGACAACAGAATCTCGTCAATTTAAAAGATGTCAACCTCAGCAATTGTGAGCACATAACTTCCCTGCCAGACCTTTCAACGGCCAGAAACC TTGAGAGATTGAATCTTCAATTCTGTACAAGTTTGGATAAGGTTCCTTCATCTATACAGCATCTTGACAAGCTTAATGATTTAGATTTGAGAGGCTGCAA AAGACTAATCAATCTTCCCAGTAGATTTAATTCAAGTTTTCTGGAGACTCTGAACCTTTCTGGTTGTTCAAATATAAAGAAGTGCCCAGAGACTGCAAGG AAACTGACATATTTAAATTTAAATGAGACTGCTGTTGAAGAGCTTCCCCAATCAATTGGGGAACAAAGTGGACTTGTTGCGTTGAATTTGAAAAACTGCA AACACCTGGTTAATCTTCCAGAAAACATATATTTGTTGAAATCTCTTCTAATTGCTGACTTCTCTGGCTGCTCATCTATCAGCAGGCTTCCTGATTTTTC GAGGAATATAAGATACTTGTACTTGAATGGAACTGCAATAGAAGAACTGCCATCTTCAATTGGTGGTCTAAGGGAACTCATTTATTTAGATCTAGTTGGC TGCAACTGGCTAAAGAATCTGCCGAGTGCGGTTTCTAAGTTGGGATGCCTTAAAAAACTTGATCTTTCCGGTTGCTCAAGTATCACGGAGTTTCCAAAGG TTTCTAATACTATAAAGGAGCTGTATTTAAATGGGACAGCAATACGAGAGATTCCCTCTTCAATAGAATGTTTGTTTGATCTTGCTGAATTGCACCTGCG AAACTGCAAACAATTTGAGATTCTTCCAAGCAGCATCTGCAAGTTGAGAAAACTGGAGAGGCTTAATCTCTCAGGTTGCCTCCAATTTAGGAATTTTCCA GAAGTTTTGGAGCCGATGGTATTTTTGAGATATCTCTATTTAGAACAGACACGCATAACAAAGTTGCCTTCACCGATTGGAAATCTGAAGGGACTTGCCT GCTTGGAAGTGGGAAACTGCAAATATCTAAATGACATCGAATGTTTTGTTGACTTGCAATTGCCCAAGAGATGCGTGGATTTAGATTGTTTGCGTAAGCT AAATCTAGATGGTTGCAGTCTATCGGAAGTGCCGGACAGTCTTGGTCGTTTATCGTCACTGGAAGTGTTAGATCTAAGTGGAAACGATTTTAAGACTATA CCTATAAGCATCAATAAACTCTTGGAGTTACAATATCTAGGATTAAGGAATTGCAAGAGACTTGAATCATTACCGGAGCTTCCACCACAGCTATCAAAGT TGGATGCAGACAATTGCGAGAGTTTGAATTATCTAGAATCAAGCTCATCAACTGTAGTTGAGGGGAACATTTTTGAATTCATTTTCACTAATTGCATGAG GTTGCTTGAGACCAATCAAATCTTGGCGTACTCATTATTGAAATTTCAACTTTATACCAAAAGGTTATACCATCAGCTGCCCGATGTTCCAGAAGGGGCA TGTAGTTTCTGCCTTCCTGGAGTTGTGACTCCGAAGTGGTTTAGCCATCAAAGTTGGGGATCTACAGTAACATTCCAGCTATCTTCATATTGGGCTAATA GCAAGTTCTTGGGTTTCTCTCTTTGCGCTGTCATTGCATTTGATTCTTTCAACCATAGTTTGCAAGTTAAATGCACATATCACTTCCACAATGAGCATGG TGATAGTCATGATTTCTATTGCTATCTCCATGGTTGGTATGATGAGAAGCTCATTAGCTCAGATCACATATTTGTGGGATTTGATCCCTGTTTGGATGCA AAAAAAAAAAACATGTTTAGTGAATATAATGAGGTCTCAGTTAAATTCCAACTGGAAGATATGAACGGCAATTTCTTACCATTAGATCTTTGTCAAGTAC TTGAGTGTGGGGTCCGTCTACTGTATGAAGATGGGATACATCAGTTTGATTTGATCATGCCAGGCTTCTCTCGTTTTCATCCTCTAGATCGAGATGGATT GGAAGCGAGGTTCCAAGCCAAGAGAGCAAGGTCCCAAGGCATGAGACGGGATTATTCTGTCATGCATACGACCTCTGAATTCTTGGCATACCTTCAGGAG CCCAATTTTTCAAAAAGGATACCTAGTTCTTGCCTCCCTGAAGATGTAACTCCGGAGTGGTTTAGCCATCAAAGCTGGGGATCTACAGTAACATGCCAGC TATCTTCACATTGTGCTAATAGCGAGTTCTTGGGTTTCTGTCTTTGCGCTGTCATTGCATCTTATTCTTTCAATCCTGATTTGGTAGTTAAATGCACATA TCACTTCCGCAATGAGCATGGTGATAGCCATGATCTCTATTGCTATCTCCATGATGAGTTTGAGGAGAGGCGCATCAACTCGGAAAACATAGTTATGAGA TTTGATCCCTGTTTGGTTGCCAAAGAAAAAGATATGTTTAGTATATACAGTGAGGTCTCAGTTGAATTCCAACTAGAAGATATGGACGGTAATCTCTTAC CATTAGATCTTTGTCAAGTAGTTGAGTGTGGGGTCCGTCTACTGCATGCGAATGATGGATTGGAAGCAATGCACCAAGCCAAGAGAGAAAGGTTCTATGA CCTTGACATGAGATGGGAGGATTATTTTGGCGTTGTTACTCGGCGGAGAAAAAAGACAAGGCATAATTAA
AA sequence Show only first row Show all	>Potri.019G070001.2 pacid=42773078 polypeptide=Potri.019G070001.2.p locus=Potri.019G070001 ID=Potri.019G070001.2.v4.1 annot-version=v4.1 MGGIGKTTIAGAFYDSFSSQYEGHHFLQNIRQESEKGRLNDLRDELLSKLLEEQNLRVGTPHIPTFIRDRLCQKKVLLVLDDVNDVRQFQHLIEERSFGE GSVVVITSRDKQVLKNVVDEIYEVEELNSHEALQLFSLNAFKGNQPPKAYMELSITAINYAKGNPLALQVLGSFLFGRERYFWESQLNEIESFPELNIYD LLRIGFDALRDHNTKSIFLDIACFFRGHRVDFVKRILDGCGFKTDIGFSVLIDRCLIKISDDKIEMHDLLQEMAHEVVRKESLDELGRQSRLWSPKDVYQ VLTNNLGTGKVEGIFLDVTKIREIELSSTALERMYKLRLLKIYNSEAGVKCRVHLPRGLEYLSEELRYLHWDGYPLTSLPSKFCPQNLVELSLSSSKVKQ LWRGQQNLVNLKDVNLSNCEHITSLPDLSTARNLERLNLQFCTSLDKVPSSIQHLDKLNDLDLRGCKRLINLPSRFNSSFLETLNLSGCSNIKKCPETAR KLTYLNLNETAVEELPQSIGEQSGLVALNLKNCKHLVNLPENIYLLKSLLIADFSGCSSISRLPDFSRNIRYLYLNGTAIEELPSSIGGLRELIYLDLVG CNWLKNLPSAVSKLGCLKKLDLSGCSSITEFPKVSNTIKELYLNGTAIREIPSSIECLFDLAELHLRNCKQFEILPSSICKLRKLERLNLSGCLQFRNFP EVLEPMVFLRYLYLEQTRITKLPSPIGNLKGLACLEVGNCKYLNDIECFVDLQLPKRCVDLDCLRKLNLDGCSLSEVPDSLGRLSSLEVLDLSGNDFKTI PISINKLLELQYLGLRNCKRLESLPELPPQLSKLDADNCESLNYLESSSSTVVEGNIFEFIFTNCMRLLETNQILAYSLLKFQLYTKRLYHQLPDVPEGA CSFCLPGVVTPKWFSHQSWGSTVTFQLSSYWANSKFLGFSLCAVIAFDSFNHSLQVKCTYHFHNEHGDSHDFYCYLHGWYDEKLISSDHIFVGFDPCLDA KKKNMFSEYNEVSVKFQLEDMNGNFLPLDLCQVLECGVRLLYEDGIHQFDLIMPGFSRFHPLDRDGLEARFQAKRARSQGMRRDYSVMHTTSEFLAYLQE PNFSKRIPSSCLPEDVTPEWFSHQSWGSTVTCQLSSHCANSEFLGFCLCAVIASYSFNPDLVVKCTYHFRNEHGDSHDLYCYLHDEFEERRINSENIVMR FDPCLVAKEKDMFSIYSEVSVEFQLEDMDGNLLPLDLCQVVECGVRLLHANDGLEAMHQAKRERFYDLDMRWEDYFGVVTRRRKKTRHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G070001 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.019G070565 [exp]	3.74	0.9622
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G138201 [exp]	6.40	0.9702
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.007G100500 [exp]	9.79	0.9676	Pt-NHX8.1
AT5G36930			Disease resistance protein (TI...		Potri.007G142600 [exp]	12.48	0.9626
AT5G36930			Disease resistance protein (TI...		Potri.007G143200 [exp]	17.32	0.9596
AT3G14470			NB-ARC domain-containing disea...		Potri.006G272066 [exp]	17.43	0.9507
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.019G014378 [exp]	22.24	0.9329
AT1G53440			Leucine-rich repeat transmembr...		Potri.010G155150 [exp]	22.44	0.9653
AT5G36930			Disease resistance protein (TI...		Potri.007G143100 [exp]	26.32	0.9504
AT1G03670			ankyrin repeat family protein ...		Potri.018G077633 [exp]	27.34	0.9615

Compare expression of checked genes

Potri.019G070001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.