Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 560 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 548 / 1e-178 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 488 / 6e-159 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 479 / 3e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 474 / 5e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 475 / 2e-152 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G31540 467 / 2e-148 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G11170 455 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G56520 449 / 5e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT2G14080 454 / 1e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069600 [exp] 1417 / 0 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 1406 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 1387 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 1244 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 1040 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 1026 / 0 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 1023 / 0 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 694 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 665 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 667 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 603 / 0 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 553 / 0 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 544 / 2e-177 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 528 / 6e-171 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 528 / 1e-170 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011104 [exp] 498 / 2e-159 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014829 [exp] 483 / 2e-156 AT5G17680 441 / 1e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 463 / 3e-145 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 461 / 3e-145 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.019G070300.2 pacid=42773073 polypeptide=Potri.019G070300.2.p locus=Potri.019G070300 ID=Potri.019G070300.2.v4.1 annot-version=v4.1 ATGGCATCTTCATCTTCTGTTGCTCATAAAAGGAAGTATGATGTGTTCCTTAGTTTTAGAGGCGAGGATACGCGCAATAATTTTACCAGCCATCTCTATG ATGCTTTGTGTCGTAAGAAAATCAAGACCTTCATTGATGACGGGCTTGAAAGAGGAGAAGAAATTACCCCTGCCCTTCTGAAAAAGATTGAAGAATCAAG AATTTCTGTAGTAATTTTCTCCAAGAACTATGCATCTTCTCCGTGGTGTGTGGATGAACTGGTGAAAATACTTGAATGCAAAGAGACTTGTGGGCAGATT GTTTTACCGGTCTTCTATCATGTGGACCCATCTGATGTTGATGAACAGACTGGGAGTTTTGGAAATGCATTTTCTGAGCTTGAAAATATTTTTAAGGGGA AGATGGACAAGGTGCCAAGGTGGAGGGCTGACATGACATACGCAGCCAGTATATCTGGATGGGATTCACAGGTTACTAGTCCGGAGTCCAAACTAGTAAC AGAAGTTGTGCAAACTATCTGGAAAAGGTTAAATCGTGCATCCCGAAGCAAATTAAGAGGTCTGGTTGGAGTAGATTCACGCATTGAGCAAATAAACAAA TTACTATCTGTTGTGCCATCAGATGTCCGCCGTATAGGAATTTGGGGCATGGGTGCTATAGGCAAGACAACTATCGCGGAAGCTTTCTTCTATAGCATCT CAAGCCAATATGAAGGCTGCCACTTTCTTCCGAACATAAGGCAGGAATCAGAAAAGGGTCGATTAAATGATCTACGAGATGAACTTCTTTCTAAATTACT GGAGGAAGAAAATCTTCGCGTTGGCACACCACATATACCTACTTTCATCAGGGATAGACTCTGCCAAAAGAAAGTTCTCCTTGTTTTGGATGATGTGATT GATGTACGACAATTCCAGCATTTAATTGAAATGCCTTTGATTGGTCCAGGAAGCGTTCTTGTTGTAACATCAAGAGACAGGCAAGTACTTAAGAATGTAG TTGATGAAATATACGAGGTTGAGGAATTAAACTCCCACGAAGCTCTTCAACTCTTTAGCTTGAATGCTTTTAAGGGAAACCACCCCCCAAAAGCTTATAT GGAGTTGTCAATCACGGCAATAAATTATGCCAAAGGGAACCCATTAGCTCTTCAAGTTTTGGGTTCCTACTTATTTGACAAAGGAAGACAATTTTGGGAA TCTCAATTAAATGAGATTGAAAGCTTTCCTGAGCTGAATATTTATGACTTGCTGAGAATAGGCTTTGATGCACTGCGTGATAATAACACGAAGAGTATAT TTCTCGATGTTGCATGTTTCTTTAGAGGGCATCGAGTTGATTTTGTAAAGCGGATACTAGATGGCTGCGGTTTCAAAACAGATACTGGATTTAGTGTTCT CATTGACAGGTGTCTCATTAAAATTTCAGATGACAAGGTTGAAATGCATGATCTTTTGCAAGAAATGGCCCATGAAGTTGTTCGAAAAGAATCTGTTGAC GAGCTAGGAAGACAAAGCAGATTGTGGAGTCCTAAAGATGTATATCAAGTGTTGACCAATAATCTGGGAACTGGAAAAGTTGAAGGGATATTCTTGGATG TTTCAAAAACAAGAGAAATTGAGTTGAGTTCTACAGCCTTGGAAAGGATGTATAAACTTAGACTGCTAAAAATTTATAATTCTGAAGCTGGAGTTAAATG CAGAGTGCACCTTCCTCATGGCCTCGAGTCTCTTTCTGAAGAGTTGAGGTATCTCCATTGGGATGGATACCCTTTGACATCTTTGCCTTGCAATTTTCGT CCACAGAACCTTGTTGAACTTAACCTATCATCTAGCAATGTTAAGCAACTGTGGAGAGGAGACCAGAATCTCGTCAATTTAAAAGATGTCAACCTCAGCA ATTGTGAGCACATAACTTTACTGCCAGACCTTTCAAAGGCCAGAAACCTTGAGAGATTGAATCTTCAATTCTGTACAAGTTTGGTTAAGGTTCCTTTATC TATACAGCATCTGGACAAGCTTATTGATTTAGATTTGAGATGCTGCACAAGCCTTATCAATCTACCCGGTAGAATTAATTCAAGATGTCTGAAGAGTCTT AACCTTTCTGGTTGTTCAAATCTCAAGAAGTGCCCAGAGACTGCAAGGAAACTAACATATTTAAATTTAAATGAGACTGCTGTTGAAGAGCTTCCCCAAT CAATTGGGGAACTCGGTGGACTTGTTGCGTTGAATTTGAAGAACTGCAAACTCCTGGTGAATCTTCCAGAAAACATGTATTTGTTGAAATCTCTTCTAAT CGCTGACATCTCTGGCTGCTCATCTATCAGCAGGTTTCCTGACTTTTCGAGGAATATTAGATACTTGTACTTGAATGGAACTGCAATAGAAGAACTGCCA TCTTCAATTGGTGATCTAAGGGAACTCATTTATTTAGATCTTTCCGGTTGCTCAAGTATCACGGAGTTTCCAAAGGTTTCAAGAAATATAAGGGAGTTGT ATTTAGATGGGACAGCAATAAGAGAGATTCCCTCTTCAATTCAATTGAATGTTTGTGTGAACTTCATGAATTGCACCTGCGAAACTGCAAACAATTTGAG ATTCTTCCAGGCAGCATCTGTAAGTTGA
AA sequence Show only first row Show all	>Potri.019G070300.2 pacid=42773073 polypeptide=Potri.019G070300.2.p locus=Potri.019G070300 ID=Potri.019G070300.2.v4.1 annot-version=v4.1 MASSSSVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITPALLKKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQI VLPVFYHVDPSDVDEQTGSFGNAFSELENIFKGKMDKVPRWRADMTYAASISGWDSQVTSPESKLVTEVVQTIWKRLNRASRSKLRGLVGVDSRIEQINK LLSVVPSDVRRIGIWGMGAIGKTTIAEAFFYSISSQYEGCHFLPNIRQESEKGRLNDLRDELLSKLLEEENLRVGTPHIPTFIRDRLCQKKVLLVLDDVI DVRQFQHLIEMPLIGPGSVLVVTSRDRQVLKNVVDEIYEVEELNSHEALQLFSLNAFKGNHPPKAYMELSITAINYAKGNPLALQVLGSYLFDKGRQFWE SQLNEIESFPELNIYDLLRIGFDALRDNNTKSIFLDVACFFRGHRVDFVKRILDGCGFKTDTGFSVLIDRCLIKISDDKVEMHDLLQEMAHEVVRKESVD ELGRQSRLWSPKDVYQVLTNNLGTGKVEGIFLDVSKTREIELSSTALERMYKLRLLKIYNSEAGVKCRVHLPHGLESLSEELRYLHWDGYPLTSLPCNFR PQNLVELNLSSSNVKQLWRGDQNLVNLKDVNLSNCEHITLLPDLSKARNLERLNLQFCTSLVKVPLSIQHLDKLIDLDLRCCTSLINLPGRINSRCLKSL NLSGCSNLKKCPETARKLTYLNLNETAVEELPQSIGELGGLVALNLKNCKLLVNLPENMYLLKSLLIADISGCSSISRFPDFSRNIRYLYLNGTAIEELP SSIGDLRELIYLDLSGCSSITEFPKVSRNIRELYLDGTAIREIPSSIQLNVCVNFMNCTCETANNLRFFQAASVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G070300 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.019G070479 [exp]	1.00	0.9473
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047200 [exp]	2.00	0.9080
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044200 [exp]	2.44	0.8852
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G386300 [exp]	3.16	0.8814
AT1G69550			disease resistance protein (TI...		Potri.004G088500 [exp]	3.46	0.8847
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.003G170600 [exp]	3.46	0.8780
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Potri.009G051500 [exp]	4.24	0.8624	NADK1.2
AT5G17680			disease resistance protein (TI...		Potri.019G069600 [exp]	5.74	0.8583
AT5G17680			disease resistance protein (TI...		Potri.019G069500 [exp]	9.79	0.8567
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	10.58	0.8663

Compare expression of checked genes

Potri.019G070300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.