Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 630 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 535 / 3e-166 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 505 / 1e-158 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 506 / 1e-154 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 506 / 4e-154 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G46450 496 / 8e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 489 / 2e-149 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 487 / 6e-149 TAO1 target of AVRB operation1 (.1) AT5G51630 485 / 1e-147 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G46470 476 / 3e-145 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069600 [exp] 2396 / 0 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 2358 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 2048 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 1922 / 0 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 1917 / 0 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 1395 / 0 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070479 [exp] 1347 / 0 AT5G17680 285 / 2e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 1276 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 706 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 642 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 595 / 0 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 558 / 1e-176 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 544 / 7e-170 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 533 / 6e-166 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 523 / 1e-160 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 511 / 1e-157 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 511 / 4e-157 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 505 / 3e-155 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10003749 [exp] 473 / 2e-142 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G070393.1 pacid=42773442 polypeptide=Potri.019G070393.1.p locus=Potri.019G070393 ID=Potri.019G070393.1.v4.1 annot-version=v4.1 ATGGCATCTTCATCTGCTGTTGCTCGTAAATGGAAGTATGATGTGTTCCTTAGTTTTAGAGGCAAGGATACGCGCAATAATTTTACCAGCCATCTCTGTA AAGATTTGCGTCGTCAGAAAATAAAGACCTTCATTGATGACAGGCTTGAAAGAGGAGAAGAAATTACCCCTGCCCTTCTGAAAACGATTGAAGAATCAAG AGTTTCTATAGTAATTTTCTCCGAGAACTATGCATCTTCTCCGTGGTGTTTGGATGAACTGGTGAAAATACTTGAATGCAAAGAGACTTATGGGCAGATT GTTTTACCGGTCTTCTATCATGTGGACCCATCTGATGTTGATGAACAGACTGGGAGTTTTGGAAATGCATTTTCTGAGCTTGAAAAAAATTTCAAGGGGA AGATGGGCAAGGTGCCAAGGTGGAGGGCTGACTTGACATACGCAGCCAGTATATCTGGATGGGATTCACAGGTTACTAGTCCGGAGGCCAAACTCATAAG CGAAGTTGTGCAAACTATCTGTAAGAGGTTAAATCGTGCTTCCCCATGCAAATTAAGAGATCTGGTTGGAGTAGATTCACGCATTGAGAAAATCAACAAA TTGCTATCCATTGTGGCATCAGATGTCCGCATTATAGGAATTTGGGGCATGGGTGGTATAGGCAAGACAACTATTGCGGAAGCTTTCTTCTATAGCATCT CAAGTCAATATGAAGGCTGCCACTTTCTTCCGAACATAAGGCAGGAATCAGAAAAGGGTCCATTAAGTGATCTACGAGATGATCTTCTTTCTAAACTACT GGAGGAAGAAAATCTTCGCGTTGGCACACCACATATAGGACCTACTTTCATCAGGGATAGACTCTGCCAAAAGAAAGTTCTCCTTGTTTTGGATGATGTG AATGATGCACGACAATTCCAGCAGTTAATTGAAGTGCCTCTGATTGGTGCAGGAAGTGTTGTTGTTGTAACATCAAGAGACAAGCAAGTACTTAAGAATG TAGCTGATGAAATATACGAGGTTGAGGAATTAAACTCCCACGAAGCTCTTGAACTCTTTAGCTTGATTGCTTTTAAGGGAAACCACCCCCCAAAATCTTA TATGGAGTTGTCAATCACGGCAATAAATTATGCCAAAGGGAACCCCTTAGCTCTTCGAGTTTTGGGTTCCTTCTTAATCCGCAGAGAAAGACATTTTTGG GAATCTCAATTAAATAACATCGAAAGCTTTCCCGAGCTGAACATTTGTGACTTGCTGAGAATAGGCTTTGATGCACTACGTGATAATAACACGAAGAGTA TATTTCTGGACATTGCATGTTTCTTTAGAGGGCATCAAGTTGATTTTGTAAAGCGGATACTTGATGGCTGCGGTTTCAAAACAGATATTGGATTTAGTGT TCTCATTGACAGGTGTCTCATTAAATTTTCAGATGACAAGGTTCAAATGCATGATCTTTTGCAAGAAATGGCCCATGAAGTTGTTCGAAAAGAATCTCTT AACGAGCTAGGAGGACAAAGCAGATCGTGGAGTCCTAAAGATGTATATCAAGTGTTGACCAATAATCAGGGAACTGGAAAAGTTGAAGGGATATTCTTGG ATGTTTCAAAAATAAGAGAAATTGAGTTGAGTTCTACTGCCTTGGAAAGGATGTATAAACTTAGACTGCTAAAAATTTATAATTCTGAAGCTGGAGTTAA ATGCAGAGTGCACCTTCCTCATGGCCTCGAGTCTCTTTCTGAAGAGTTGAGGTATCTCCATTGGGATGGATACCCTTTGACATCTTTGCCTAGCAATTTT CGTCCACAGAACCTTGTTGAAATTAACCTATCATGTAGCAAGGTTAACCGACTGTGGAGAGGACACCAGAATCTCGTCAATTTAAAAGATGTCAACCTCA GCAATTGCGAGCACATAACTTTCATGCCAGACCTTTCAAAGGCCAGAAACCTTGAGAGATTGAATCTTCAATTCTGTACAAGTTTGGTTAAGTTTCCTTC ATCTGTTCAGCATCTGGACAAGCTTGTTGATTTAGATTTGAGAGGCTGCAAAAGACTAATCAATCTCCCCAGTAGAATTAATTCAAGTTGTCTGGAGACT CTGAACGTTTCTGGCTGTGCAAATCTCAAGAAGTGCCCAGAGACTGCAAGGAAACTGACATATTTAAATTTAAATGAGACTGCTGTTGAAGAGCTTCCCC AATCAATTGGGGAACTCAATGGACTTGTGGCGTTGAATTTGAAGAACTGCAAACTCCTGGTGAATCTTCCAGAAAACATGTATTTGTTGAAATCTCTTCT AATTGCTGACATCTCTGGCTGCTCATCTATCAGCAGGCTTCCTGATTTTTCGAGGAATATAAGATACTTGTACTTGAATGGAACTGCAATAGAAGAACTG CCATCTTCAATTGGTGATCTAAGGGAACTCATTTATTTAGATCTAGGTGGCTGCAACAGGCTAAAGAATCTGCCGAGTGCGGTTTCTAAGTTGGTATGTC TTGAAAAACTTGACCTTTCCGGTTGCTCAAACATCACGGAGTTTCCAAAGGTTTCAAATACTATAAAGGAGCTGTATTTAAATGGGACAGCAATACGAGA GATTCCCTCTTCAATAGAATGTTTGTTTGAGCTTGCTGAATTGCACCTGCGAAACTGCAAACAATTTGAGATTCTTCCAAGCAGCATCTGCAAGTTGAGA AAACTGCAGAGGCTTAATCTCTCAGGTTGCGTCCAATTTAGGGATTTTCCAGAAGTTTTGGAGCCGATGGTATGTTTGAGATATCTCTATTTAGAACAGA CACGCATAACAAAGTTGCCTTCACCGATTGGAAATCTCAAGGGACTTGCCTGCTTGGAAGTTGGAAACTGCCAGCATCTGCGAGACATCGAATGTATTGT TGACTTGCAATTGCCCGAGAGATGCAAATTAGATTGTTTGCGAAAGCTAAATCTAGATGGTTGCCAGATATGGGAAGTGCCGGACAGTCTTGGTCTTGTA TCGTCACTGGAAGTGTTAGATCTAAGTGGAAACAATTTTCGGAGTATACCTATAAGCATCAATAAACTCTTTGAGTTGCAATATCTAGGATTAAGGAATT GCAGGAATCTTGAATCATTACCGGAGCTTCCACCACGGCTATCAAAGTTGGATGCAGACAATTGCTGGAGTTTGAGAACAGTATCATGCTCATCAACTGC AGTTGAGGGGAACATTTTTGAATTTATTTTCACTAATTGCAAGAGGTTGCGTAGGATCAATCAAATCTTGGAGTACTCATTATTGAAATTTCAACTTTAT ACCAAAAGGTTATACCATCAGCTACCCGATGTTCCAGAAGAGGCATGTAGTTTCTGTCTCCCTGGAGATATGACTCCAGAGTGGTTTAGCCATCAAAGTT GGGGATCTATAGTAACATTCCAGCTATCTTCACATTGGGCTCATACCAAGTTCTTGGGTTTCTCTCTTTGCGCTGTCATTGCATTTCATTCTTTCAGCCA TAGTTTGCAAGTGAAATGCACATATCACTTCCACAATGAGCATGGTGATAGCCATGATCTGTATTGCTATCTCCATGTTTGCTATGGTAATGATCTGTAT TGCTATCTCCATGATTGGTATGGTGAAAAGCGCATCAACTCAAAACACATATTTGTTGGACTTGATCCCTGTTTGGTTGCCAAAGAAAATGATATGTTTA GTAAATACAGTGAGGTCTCAGTTGAATTTCAATTGGAAGATATGAACGGCTATCTCTTACCATTAGATCTTTGTCAAGTGGTTGAGTGTGGGGTCCGTCT ACTGCATGCCAATGATGAAGATGAGATACAACGCTTTCATTTGATCGACTCCTCTCGTTTTTATCCTCTAGATCTAGATGAATTGGAAGCAAGGTTCCAA GCCAAGAGAGCAAGGTTAGAAGCCAATAGATTGGAGGATTTTTTTGACTTGCGTAGGATCTATGAATTCTTGACGAACTCCTTACTGCTTTCTATATTTT ATTCCGAGGAGTTATACCATGAGATGCCGATGAGTTATACCATGAGTTCTAGGGAATGTAGTAGTTTCTACCTCCCTGGAGATGTGACTCCGGAGTGGTT TAGCCATCAAAGATGGGGATCTACAGTAACATTCCACCTATCTTCACAGTGGGCTAATAGCAAGTCCTTCCTGGGTTTCTGTCTTTGCGCTGTCATTGCA TTTTGTTCTTTTGGCCATAGTTTGCAAGTTAAATGCACATATCATTTCTGCAATGAGCACGGTGATAGCCATGATCTCTATTTCTATCTCCGTGATTGGT ATGATAAGGAGTGCATCAACTCAACACACATATTCGTGGGATTTGATCCCTGTTTGGTTGCCAAAGAAAAGGATATGTTTAGTGAATACAGTGAGGTCTC AGTTGAATTTCAACCGGCAGATATTTACGGCAATCTCTTACCATTAAATCTTTGTCAAGTATACGAGTGTGGAGTCCGTCCACTGGACACCGAATATGAG ATATATCGCTTTGCTTTGCCCATGCAAGGCCACTATAGGATTTGTTCTCTGGATCGAGATGAATTGGAAGCAATGTTCCAAGCCAGGAGAGGAAGGTTCG AAGGCATGATGAAGTTGACAAACAGAAGAAACAAAGAAATGACTAAATCTTCTCAGCTTTCTCAGCATCGAAGACCTCTTCTTTAG
AA sequence Show only first row Show all	>Potri.019G070393.1 pacid=42773442 polypeptide=Potri.019G070393.1.p locus=Potri.019G070393 ID=Potri.019G070393.1.v4.1 annot-version=v4.1 MASSSAVARKWKYDVFLSFRGKDTRNNFTSHLCKDLRRQKIKTFIDDRLERGEEITPALLKTIEESRVSIVIFSENYASSPWCLDELVKILECKETYGQI VLPVFYHVDPSDVDEQTGSFGNAFSELEKNFKGKMGKVPRWRADLTYAASISGWDSQVTSPEAKLISEVVQTICKRLNRASPCKLRDLVGVDSRIEKINK LLSIVASDVRIIGIWGMGGIGKTTIAEAFFYSISSQYEGCHFLPNIRQESEKGPLSDLRDDLLSKLLEEENLRVGTPHIGPTFIRDRLCQKKVLLVLDDV NDARQFQQLIEVPLIGAGSVVVVTSRDKQVLKNVADEIYEVEELNSHEALELFSLIAFKGNHPPKSYMELSITAINYAKGNPLALRVLGSFLIRRERHFW ESQLNNIESFPELNICDLLRIGFDALRDNNTKSIFLDIACFFRGHQVDFVKRILDGCGFKTDIGFSVLIDRCLIKFSDDKVQMHDLLQEMAHEVVRKESL NELGGQSRSWSPKDVYQVLTNNQGTGKVEGIFLDVSKIREIELSSTALERMYKLRLLKIYNSEAGVKCRVHLPHGLESLSEELRYLHWDGYPLTSLPSNF RPQNLVEINLSCSKVNRLWRGHQNLVNLKDVNLSNCEHITFMPDLSKARNLERLNLQFCTSLVKFPSSVQHLDKLVDLDLRGCKRLINLPSRINSSCLET LNVSGCANLKKCPETARKLTYLNLNETAVEELPQSIGELNGLVALNLKNCKLLVNLPENMYLLKSLLIADISGCSSISRLPDFSRNIRYLYLNGTAIEEL PSSIGDLRELIYLDLGGCNRLKNLPSAVSKLVCLEKLDLSGCSNITEFPKVSNTIKELYLNGTAIREIPSSIECLFELAELHLRNCKQFEILPSSICKLR KLQRLNLSGCVQFRDFPEVLEPMVCLRYLYLEQTRITKLPSPIGNLKGLACLEVGNCQHLRDIECIVDLQLPERCKLDCLRKLNLDGCQIWEVPDSLGLV SSLEVLDLSGNNFRSIPISINKLFELQYLGLRNCRNLESLPELPPRLSKLDADNCWSLRTVSCSSTAVEGNIFEFIFTNCKRLRRINQILEYSLLKFQLY TKRLYHQLPDVPEEACSFCLPGDMTPEWFSHQSWGSIVTFQLSSHWAHTKFLGFSLCAVIAFHSFSHSLQVKCTYHFHNEHGDSHDLYCYLHVCYGNDLY CYLHDWYGEKRINSKHIFVGLDPCLVAKENDMFSKYSEVSVEFQLEDMNGYLLPLDLCQVVECGVRLLHANDEDEIQRFHLIDSSRFYPLDLDELEARFQ AKRARLEANRLEDFFDLRRIYEFLTNSLLLSIFYSEELYHEMPMSYTMSSRECSSFYLPGDVTPEWFSHQRWGSTVTFHLSSQWANSKSFLGFCLCAVIA FCSFGHSLQVKCTYHFCNEHGDSHDLYFYLRDWYDKECINSTHIFVGFDPCLVAKEKDMFSEYSEVSVEFQPADIYGNLLPLNLCQVYECGVRPLDTEYE IYRFALPMQGHYRICSLDRDELEAMFQARRGRFEGMMKLTNRRNKEMTKSSQLSQHRRPLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G070393 [exp]	0	1
AT5G07630			lipid transporters (.1)		Potri.003G107501 [exp]	1.41	0.9010
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.011G165700 [exp]	21.44	0.8640
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044800 [exp]	22.24	0.8746
					Potri.004G011600 [exp]	30.98	0.8521
AT5G36930			Disease resistance protein (TI...		Potri.011G015050 [exp]	35.35	0.8841
AT5G01750			Protein of unknown function (D...		Potri.016G131500 [exp]	42.84	0.8815
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Potri.004G031700 [exp]	57.96	0.8385	PtrcCXXS1
					Potri.004G084050 [exp]	72.52	0.8291
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047000 [exp]	74.83	0.8268
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014700 [exp]	77.66	0.8388

Compare expression of checked genes

Potri.019G070393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.