Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 722 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 628 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 610 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 576 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G16890 571 / 0 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G49140 561 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 555 / 2e-176 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 548 / 4e-174 TAO1 target of AVRB operation1 (.1) AT5G46450 546 / 7e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G08450 541 / 4e-171 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069500 [exp] 1592 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 1379 / 0 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 1366 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 1343 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 1090 / 0 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 1062 / 0 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 1057 / 0 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 805 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 772 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 788 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 686 / 0 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 647 / 0 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 642 / 0 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 626 / 0 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 606 / 0 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018616 [exp] 590 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 588 / 0 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 587 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014829 [exp] 570 / 0 AT5G17680 441 / 1e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G070700.4 pacid=42773033 polypeptide=Potri.019G070700.4.p locus=Potri.019G070700 ID=Potri.019G070700.4.v4.1 annot-version=v4.1 ATGGCATCTTCATCTGCTGTTGCTCATAAATGGAAGTATGATGTGTTCCTTAGTTTTAGAGGCAAGGATACGCGCAATAATTTTACCAGCCATCTCTATG ATGCTTTGTGTCGTAAGAAAATCAAGACCTTCATTGATGATGGGCTTGAAAGAGGAGAAGAAATTACGGGTGCACTTTTGAGAACAATTGAAGAATCGAG AATTTCAGTGATAATATTCTCAAGAAACTATGCATCTTCTCCATGGTGTGTGGATGAACTGGTGAAGATACTTGAATGCAAGAAGGCATATGGGCAGATT GTTTTACCAGTTTTCTATCATGTGGACCCGTCTGATGTTGATGAACAGACAGGGAGTTTTGGAAATGCGTTTGCTGAGCTTGAAAGAAATTTTAAGCAGA AGATGGACAAGGTTCCAAGGTGGAGAGCTGACTTAACAAGTGCTGCCAATATATCCGGATGGGATTCACAAGTCATTAGGCCTGAGTCGAGACTCGTGGA TCAAATTGTGCATCATATTTTGAAGAAATTGAATTATTCATCCTCAAGTGATTTGAAGGGCCTGGTCGGAATGGATTCACGCATGAAGCAAATCGAAGCC TTATTATGCACACAGTTACCAGAGGTTTGTGTTGTAGGAATATGGGGCATGGGTGGTATTGGTAAGACAACCATTGCTGGAGAGATTTTCAACAAGATCG CTAGGGAATATGAAGGTCACTATTTTCTTGCAAATGTGAGGGAGGAATTAGAAAAGAATGGAGGATTATTTCGTATGCGAGATGACCTTTTCTCTAAAAT AACAGAGGAAGAAAATCTACATATACGCACTCCACGTATTGGACACCCTTTCATTAAAGACAGGATCTGCCGTAAAAAGGTTCTGATTGTTTTTGATGAT GTGAATAATGTAGACCAAATTGAAATGTTACTTGGAGGATGTGATTTTTTTGGTCCAGGAAGTAGAATTATCCTAACATCTAGAGATAAACAGGTACTTA AGAAATATTCAGACAAAATATTTGAGGTTGGGGGATTGAATTACCAGGAAGCTCTTCATCTCTTTAGTTTGCATGCATTTAAGGATAATCAGCCCCCATA CAATTATATGGAGCTGTCTGTGAGGGCAATAAATTACGCTAAAGGTAATCCATTAGCTCTTAAAGTCTTAGGTTCCTTTCTATTTGGCAGAACGAGAAAA GAATGGGGAAGTGCATTGAACAAGGTTGAAAAACTTCCTCAGAAAGAAGTTCATGGTGTGTTGAGAATAAGTTTTGATGCACTTGATAGAGAAGAGAAGA GTATATTTCTCGATATTGCGTGTTTTTTTAAAGGGCAGAACATTGATTTTATAAAGAGAATACTCGATGGCTGTGGCTTCTCAGCTGATATAGGAATTAG TGTTCTTGTCGATAAGTGTCTCGTTACTATTTCTGGAAACAAGATAGGGATGCATGATTTGTTGCAGCATATGGCCCATGAAATTGTCAGCATGGAATCA GTCAAGGACCCAGGAAAACGCAGTAGATTGTGGCATTTTGATGATGTGTATGAAGTGTTGACCAGAAATCTGGGAACTAAAAACGTTGAAGGGATATTCG TAGACTTGGATAGTTCTGAAAAGATAATGAAGGTGAGTTCCAGAGCGTTTGCGAGGATGTATAATCTTAGATTGCTCAAAGTTTATAATTCAGGATTCGG AAATAATAAGAAAGTGCTCCTTCCTCATGGCCTGGATTCTATTTCCAATGAGTTGAGGTATCTCCACTGGGATGGATACCCTTTGAGATCTTTGCCGTTC AATTTTATTCCACAGAACCTTGTTGAAATTAATATATCTTCAAGCAAGGTTGAACAACTTTGGCAAGGAAACCAGAATCTAGTGAATCTAAAAGAGGTCA ACCTCAGCAGTTGTAAGCATCTAACAGAAATCCCAGACCTCTCACAGGCTGCAAATCTCGAGAGTTTGAATCTTCAATCCTGTACAAGTTTGACAGAAGT TCCTCAATCTATCCGATATCTAGACAAACTCTCCGATTTCAATCTGAGATCCTGTACAAGCCTTATAAGCCTGCCAAGTAGTATTAATTTGAAATCACTC AAGACTCTTAACCTCTCAGGCTGCTTAAATCTTAAGAATTATCCAGAGATCGCGGAGAATGTGCAGTACTTAAATTTAAATGAGACTTCAGTTCCAGAAC TTCCCCGATCAATTGAGCATCTTGGTAGACTTGTTGCATTGAATTTGAGGGATTGTAAGCAACTTGGGAATCTTCCGGAGGATGTTTGTTCGTTGAAGTC TCTTGAAATTGCTGATCTGTCAGGCTGCTCAAATATCACCATGTTTCCAGCTTTTCCAGAGAAAGTCAGATATATTTACTTGAGTGGAACTGCAATAGAA GAAGTTCCGTCTTCAATCGATCGCCTTTCAAGACTCTTTTCTTTGGACCTAATGGGTTGCAAAAGGCTCAAGAATCTTCCATGTACTTTTTCTAGGTTGG CATCTCTTGAAAAACTCAGTCTCTCTGGGTGCTCAATCATCACTGAGTTTCCAGAGCTTCCAGTGAGTATTAAGGAGTTGTATTTGGATGGGACAGCAAT ACGAGAGATTCCTTCATCAGTTGAGCATTTGTCCAACCTTGTTGAATTGAGTCTGCAAAACTGTACAAGATTTGAGATTCTACCTGGTAGTATTTTTAAC TTGGAATCACTAAAAAAACTCAACCTCTTTGGATGCTCCCAATTCCAGACTTTCCCTTCTGTGGATAAATATGGATATTTGACTTACCTTTGTTTAGATG GAACAGCCATAAGAGCATTACCCTGGACAATCAAAGTTCTAGCAAGTGTTTCTCGCTTGGAAATAAAAAACTGCAGAAATCTGGAATGCAACTTGCTCCC TGAGGTTCAGAGTCTTTTGAATTTCAATGAGAGAGAGGTGAAATTATATCGCCTGCGTCAGCTATATCTAAACGATTGCAACTTACTTTGCTTGCCTGGG AGTCTTTCCTGCTTATCCTCACTAGAAGTACTGGATCTCAGTGGAAACAGTTTTACTCTGCTACCGATACTCTCAAAACTCCTTAAGCTGGAATCCCTTA TTTTAAGGAATTGCTTTAGACTTACATGTATTCCTACCCTTCCACCAAGACTAATGAAACTAGATGCACACAATTGTTCATCGGTGAGCGGTGTATTAGG CAGATATTCAACTGAGGTTGAGGGAAATATTTTTGAATTGCTATTTACTAACTGCTTTGGCTTCCATGACAAAACTGTATGCAAATGCAACGACATCATA GAATATTCCTTGAGGAAAATTAAGGTTTACGCCAAAAGATTGTATACACATATGCTATTTGTACTGCCCGGGACATCTAGTGTTTGCTTCCCAGGAAGAA ATGTTCCAGACTGGTTTGTCAATCAAACTCAGGGATTTTCATTAACAATTAAGCAGCCGTCACAATGTGCTCGTAATCAGTTCCTGGGTTTTGTTCTGTG TGCTGTTGTTGACTTTGGATACTTATTCAAAAGCTCTGATGGCTTCCAAGTTAATTGTATATATCATATCAAGAACGAATATGGGGATAGTCATCATCTT CAAAGCTACTTTGGTGGTTGGTTTGACGGGGAGCATGTTCGAGAAGTCTCAAACGATATGTTATTCTTGGGGTATGATCCATGTTTGGAATTTACAGAAT CTTATTTGTTTGGAAAATGCAGTGAGGTAGTAATTGAATTCTACTCGGAAGATAGGAACAACAATCCTTTAAAGAGTTGCAATGTGATCAAGTGTGGGGT CTGTCTGCTATCTGCAGAAGATGATAATTCATGA
AA sequence Show only first row Show all	>Potri.019G070700.4 pacid=42773033 polypeptide=Potri.019G070700.4.p locus=Potri.019G070700 ID=Potri.019G070700.4.v4.1 annot-version=v4.1 MASSSAVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITGALLRTIEESRISVIIFSRNYASSPWCVDELVKILECKKAYGQI VLPVFYHVDPSDVDEQTGSFGNAFAELERNFKQKMDKVPRWRADLTSAANISGWDSQVIRPESRLVDQIVHHILKKLNYSSSSDLKGLVGMDSRMKQIEA LLCTQLPEVCVVGIWGMGGIGKTTIAGEIFNKIAREYEGHYFLANVREELEKNGGLFRMRDDLFSKITEEENLHIRTPRIGHPFIKDRICRKKVLIVFDD VNNVDQIEMLLGGCDFFGPGSRIILTSRDKQVLKKYSDKIFEVGGLNYQEALHLFSLHAFKDNQPPYNYMELSVRAINYAKGNPLALKVLGSFLFGRTRK EWGSALNKVEKLPQKEVHGVLRISFDALDREEKSIFLDIACFFKGQNIDFIKRILDGCGFSADIGISVLVDKCLVTISGNKIGMHDLLQHMAHEIVSMES VKDPGKRSRLWHFDDVYEVLTRNLGTKNVEGIFVDLDSSEKIMKVSSRAFARMYNLRLLKVYNSGFGNNKKVLLPHGLDSISNELRYLHWDGYPLRSLPF NFIPQNLVEINISSSKVEQLWQGNQNLVNLKEVNLSSCKHLTEIPDLSQAANLESLNLQSCTSLTEVPQSIRYLDKLSDFNLRSCTSLISLPSSINLKSL KTLNLSGCLNLKNYPEIAENVQYLNLNETSVPELPRSIEHLGRLVALNLRDCKQLGNLPEDVCSLKSLEIADLSGCSNITMFPAFPEKVRYIYLSGTAIE EVPSSIDRLSRLFSLDLMGCKRLKNLPCTFSRLASLEKLSLSGCSIITEFPELPVSIKELYLDGTAIREIPSSVEHLSNLVELSLQNCTRFEILPGSIFN LESLKKLNLFGCSQFQTFPSVDKYGYLTYLCLDGTAIRALPWTIKVLASVSRLEIKNCRNLECNLLPEVQSLLNFNEREVKLYRLRQLYLNDCNLLCLPG SLSCLSSLEVLDLSGNSFTLLPILSKLLKLESLILRNCFRLTCIPTLPPRLMKLDAHNCSSVSGVLGRYSTEVEGNIFELLFTNCFGFHDKTVCKCNDII EYSLRKIKVYAKRLYTHMLFVLPGTSSVCFPGRNVPDWFVNQTQGFSLTIKQPSQCARNQFLGFVLCAVVDFGYLFKSSDGFQVNCIYHIKNEYGDSHHL QSYFGGWFDGEHVREVSNDMLFLGYDPCLEFTESYLFGKCSEVVIEFYSEDRNNNPLKSCNVIKCGVCLLSAEDDNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G070700 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003600 [exp]	4.00	0.8794
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.006G164516 [exp]	5.65	0.8677
AT4G27190			NB-ARC domain-containing disea...		Potri.001G444000 [exp]	6.24	0.8724
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170400 [exp]	9.48	0.8568
AT2G44930			Plant protein of unknown funct...		Potri.014G054100 [exp]	9.79	0.8603
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	10.81	0.8583
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.006G258900 [exp]	11.95	0.8536
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.008G169400 [exp]	15.96	0.8638	PHO1.1
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047000 [exp]	17.97	0.8291
AT5G49690			UDP-Glycosyltransferase superf...		Potri.017G042800 [exp]	22.24	0.8081

Compare expression of checked genes

Potri.019G070700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.