Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04890 193 / 9e-57 GRAS SCL21 SCARECROW-like 21 (.1) AT3G54220 188 / 9e-53 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G21450 187 / 1e-52 GRAS SCL1 SCARECROW-like 1 (.1) AT3G03450 182 / 3e-51 GRAS RGL2 RGA-like 2 (.1) AT5G48150 180 / 4e-51 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G55580 178 / 1e-50 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT1G14920 174 / 1e-48 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 173 / 2e-48 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G66770 174 / 4e-48 GRAS GRAS family transcription factor (.1) AT5G41920 170 / 4e-48 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114900 [exp] 801 / 0 AT2G04890 184 / 2e-53 SCARECROW-like 21 (.1) Potri.001G326000 [exp] 216 / 4e-63 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.001G109400 [exp] 189 / 5e-53 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.017G125200 [exp] 185 / 6e-52 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.002G073400 [exp] 184 / 6e-52 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.003G122400 [exp] 185 / 1e-51 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.001G409500 [exp] 182 / 2e-51 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.007G026300 [exp] 181 / 8e-51 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.016G143833 [exp] 182 / 5e-50 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014822 [exp] 586 / 0 AT3G54220 191 / 1e-53 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10017908 [exp] 559 / 0 AT3G54220 194 / 8e-55 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10041540 [exp] 216 / 7e-63 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 216 / 5e-62 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10033583 [exp] 188 / 4e-53 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 187 / 1e-52 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10040734 [exp] 187 / 2e-52 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10016496 [exp] 185 / 2e-51 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10024014 [exp] 183 / 2e-51 AT5G66770 590 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 183 / 8e-51 AT1G63100 669 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.019G085600.1 pacid=42773734 polypeptide=Potri.019G085600.1.p locus=Potri.019G085600 ID=Potri.019G085600.1.v4.1 annot-version=v4.1 ATGGAAGGCATGGAAGATCAAGAGGAACTTTTGAATCTTAGCCTAGCAATTGTTACAGACTCCAATGGTGACATGAAAAGGAAGAGAAAGAGATCAAGGG CAGATGTTTCCAATCCTTTGATGAATACTTATGAGGGTCGTAGTGAAGGGAAAATATTTAGGCTACTCCAAATGAGGGAACAAATGCTAAAACTAGACCA TAAGAGGAAAGGAGCTGTTGAAGAAAATGGCAAGGGGCTTCATTTGATTCACTTGCTTCTTATAGCTGCCACAGCACTTGACGAGAACAATGTAGGCTCA GCCTTGGAGAATCTAACAGAATTGTATCAAAGTGTCTCCTTATCCGGTGATTCGGTGCAAAGGGTCGTTGCTTATTTTGCTGATGGATTGGCCGCAAGGC TCCTCGGCAAGAAATCTCCCTTCTATGATATGATCATGAAGGAACCAACATGTGAAGAAGAGTTCTTGGCGTTCACAGATCTTTACAGGGTGTCTCCTTA TTACCAGTTTGCTCATTTCACTGCAAACCAGGCAATCCTTGAGGCCTATGAGAAGGAAGAAGAGAATAACAACAGTTCATTGCATGTCATTGATTTTGAC GTCTCCTATGGCTTTCAATGGCCTTCTTTAATACAGTCTCTCTCCGAAAAGGCAAGCAGTGGCAACCGAATTTCTCTGCGAATAACCGGATTCGGCAGAA GAATAGAAGAATTGCAAGAAACTGAGAGTAGATTACTTAGCTTTGCGAAAGGGTTTCGCAATCTAGTCTTTGAGTTTCAAGGGTTGTTAAGAGGGTCTAA GCTCTTCAACCTAAGGAAAAAGAAAAATGAAACAGTTGCTGTGAATTTAGTCTTTCATTTGAATACTCTGAACGATTCTTTGAAGATATCCGACACATTG AAATCAGTACATTCACTTAACCCCTCCATTGTTGTCTTGGTGGAGCAAGAAGGTAGCAGAAGCCCAAGAAGCTTTTTGTCAAGATTCATGGAGTCTTTGC ACTATTTTGCAGCAATGTTTGATTCTTTAGATGATTGTCTTCCTCTAGAAAGCTCAGAGAGATTAAGCATTGAAAAGAATCATCTTGGTAAAGATATCAA AAGGATGCTCAACTGCGACAAAGATGATGCAAACTGTCCAAGATATGACAAGATGGAAACATGGAAAGGAAGGATGGAGGGCCATGGATTTGCAGGCATT AAACTCAGCTCCAAGTCCTTGATACAAGCCAAGCTTCTTTTGAAAATTAGAACTCATTATTGTCCTCTTCAATTTGATGGAGATTTTTGTGGTGGGTTTA AAGTTTTTGAAAGAGATGATGGGAAAGGTATTTCTTTAGGGTGGCAAGATAGGTATTTAATTACTGCCTCTGCATGGCGTATTTGTGCATGA
AA sequence Show only first row Show all	>Potri.019G085600.1 pacid=42773734 polypeptide=Potri.019G085600.1.p locus=Potri.019G085600 ID=Potri.019G085600.1.v4.1 annot-version=v4.1 MEGMEDQEELLNLSLAIVTDSNGDMKRKRKRSRADVSNPLMNTYEGRSEGKIFRLLQMREQMLKLDHKRKGAVEENGKGLHLIHLLLIAATALDENNVGS ALENLTELYQSVSLSGDSVQRVVAYFADGLAARLLGKKSPFYDMIMKEPTCEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEKEEENNNSSLHVIDFD VSYGFQWPSLIQSLSEKASSGNRISLRITGFGRRIEELQETESRLLSFAKGFRNLVFEFQGLLRGSKLFNLRKKKNETVAVNLVFHLNTLNDSLKISDTL KSVHSLNPSIVVLVEQEGSRSPRSFLSRFMESLHYFAAMFDSLDDCLPLESSERLSIEKNHLGKDIKRMLNCDKDDANCPRYDKMETWKGRMEGHGFAGI KLSSKSLIQAKLLLKIRTHYCPLQFDGDFCGGFKVFERDDGKGISLGWQDRYLITASAWRICA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04890	GRAS	SCL21	SCARECROW-like 21 (.1)		Potri.019G085600 [exp]	0	1
AT5G16730			Plant protein of unknown funct...		Potri.013G079000 [exp]	12.12	0.8886
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.011G088100 [exp]	13.15	0.8916
AT3G07010			Pectin lyase-like superfamily ...		Potri.014G178100 [exp]	14.66	0.8528
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	16.37	0.8902	Pt-FLA14.7
AT2G17570			Undecaprenyl pyrophosphate syn...		Potri.005G100800 [exp]	16.49	0.8770
AT1G18290			unknown protein		Potri.012G045600 [exp]	22.18	0.8771
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Potri.001G147000 [exp]	24.18	0.8751
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Potri.014G103500 [exp]	27.34	0.8733
AT3G01780		TPLATE	ARM repeat superfamily protein...		Potri.001G334300 [exp]	27.71	0.8755
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.005G108000 [exp]	28.42	0.8850

Compare expression of checked genes

Potri.019G085600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.