Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09360 599 / 0 LAC14 laccase 14 (.1) AT5G05390 543 / 0 LAC12 laccase 12 (.1) AT5G48100 541 / 0 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) AT5G03260 540 / 0 LAC11 laccase 11 (.1) AT2G30210 528 / 0 LAC3 laccase 3 (.1) AT2G38080 523 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G07130 521 / 0 LAC13 laccase 13 (.1) AT5G01190 521 / 0 LAC10 laccase 10 (.1) AT5G58910 513 / 5e-178 LAC16 laccase 16 (.1) AT2G29130 512 / 7e-177 LAC2, ATLAC2 laccase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G088600 [exp] 1159 / 0 AT5G09360 607 / 0.0 laccase 14 (.1) Potri.019G088900 [exp] 1139 / 0 AT5G09360 598 / 0.0 laccase 14 (.1) Potri.019G088800 [exp] 1123 / 0 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088401 [exp] 1109 / 0 AT5G09360 592 / 0.0 laccase 14 (.1) Potri.005G200500 [exp] 624 / 0 AT5G48100 615 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.001G206200 [exp] 622 / 0 AT5G09360 796 / 0.0 laccase 14 (.1) Potri.005G200600 [exp] 620 / 0 AT5G48100 607 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.011G071100 [exp] 615 / 0 AT5G48100 612 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200700 [exp] 602 / 0 AT5G48100 635 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026812 [exp] 697 / 0 AT5G09360 540 / 0.0 laccase 14 (.1) Lus10036070 [exp] 639 / 0 AT5G09360 495 / 4e-171 laccase 14 (.1) Lus10041067 [exp] 603 / 0 AT5G09360 622 / 0.0 laccase 14 (.1) Lus10002227 [exp] 558 / 0 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10026512 [exp] 557 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10023189 [exp] 555 / 0 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10035517 [exp] 545 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 543 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 537 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10041066 [exp] 536 / 0 AT5G09360 555 / 0.0 laccase 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.019G088700.1 pacid=42774232 polypeptide=Potri.019G088700.1.p locus=Potri.019G088700 ID=Potri.019G088700.1.v4.1 annot-version=v4.1 ATGGGGATAAGCAGGTTGGGTTTTATCGCAGGGCTGATATGGTTTATGGCCATGGATTGGCAGGGCCTTTGCATGGCTCAAAGCAATGTTCACCGCTATA ATTTTGTTCTACAAAATGCCCAGTTTACAAGACTGTGCGAGACAAAGACTATGCTTACTGTAAATGGAAGTTTTCCAGGGCCAACAATACATGCTCGTAG AGGCGATACAATTTATGTCAATGTGCACAATGAAGGAGATTACGGTGTCACGATTCATTGGCATGGAGTGAAGCAGCCAAGAAATCCATGGTCTGATGGC CCCGAAAATATCACACAGTGCCCAATTCAGCCAGGAAAAAACTTCACATACGAGATCATATTATCTGATGAAGAAGGAACTCTGTGGTGGCATGCACATA GCGACTGGACTCGAGCCACAGTCCATGGTGCCATTGTCATCTCGCCGGCTCGTGGAACCACCTATCCGTTTCCCGCACCTTATGCAGAACAAACAATTAT TATTGGATCTTGGTTTAAGGGTGATGTGAAGGCGGTGATTGACGATGCTCTTGCAACTGGTGGTGGACCTGCAATATCCAACAGTCTTACCATCAATGGC CAGCCAGGAGATAAATATCCATGCTCCGAAGAAAACACATACCGTTTGATGGTTAATTCTGGCAGGACTTACCTTCTGCGAGTCATAAATGCCGTGATGA ACGAAGAACAATTCTTCGGAATTGCGGGCCATAGCCTCACAGTTGTTGGACAAGATGCGGCGTACATAAAACCCATAACCACCAACTATATAATGATCAC CCCAGGACAAACAATGGACATTTTGGTCACAGCAAATCGGCCTCGAAGCTATTATTACATTGCTTCTCACTCTTTTGCTGATGGTGCTGGGATTGCATTT GACAACACCACTACTACAGCTATTTTCCAATATAATGGCAACTATGGCCGCCCATCATCTATTCCACTCCCAGTCCTCCCAATATTTAATGATACTGCAG CTGCAGAAAACTACACCAGTCGTGTCAGGGGTTTAGCTAGCAGAGACCACCCTGTTAATGTCCCTCAAACAGTTAACCGACGTCTTTATATTACAATTGC TTTGAATCGTTTGCCTTGCACCGAGGCAACATGCACAGGACCAAATCGGTTATTTGCAAGCATGAACAACGTCAGTTTTGCAGCTAAGCCAATTGATATA TTGCAAGCCTACTATAGAAGTATCAATGGTGTTTTCGACGCAGATTTCCCAAGTGAGCCACAAAAGTATTTCAACTTCACAGGAAATGTGACGAGCATTA ATGTCGCTACGGCCAGAGGGACAAAGGTGACGATGTTGAATTATGGAGAAGCAGTTGAGATAGTCTTCCAAGGGACTAATTTGTTAGCTGAGATGAACCA TCCTATCCATCTACATGGATTTAGTTTCTACTTGGTTGGTCATGGAAAGGGTAATTTCAACAACGAGACTGATCCCAAGTCTTACAATTTGATCGATCCT CCTGAAATCAACACTGTTGCACTTCCTCGGAGCGGGTGGGCTGCCATCAGATTTGTCGCCAACAATCCTGGGGTGTGGTTCATCCATTGTCACTTGGAAA AGCACTCAAGCTGGGGCATGGACACAGTTCTCATCGTGAGGAACGGCAGAACAAGGGCACAAAGTATGCGCCCTCCTCCGGCGACCCTGCCATCTTGCTC CTAG
AA sequence Show only first row Show all	>Potri.019G088700.1 pacid=42774232 polypeptide=Potri.019G088700.1.p locus=Potri.019G088700 ID=Potri.019G088700.1.v4.1 annot-version=v4.1 MGISRLGFIAGLIWFMAMDWQGLCMAQSNVHRYNFVLQNAQFTRLCETKTMLTVNGSFPGPTIHARRGDTIYVNVHNEGDYGVTIHWHGVKQPRNPWSDG PENITQCPIQPGKNFTYEIILSDEEGTLWWHAHSDWTRATVHGAIVISPARGTTYPFPAPYAEQTIIIGSWFKGDVKAVIDDALATGGGPAISNSLTING QPGDKYPCSEENTYRLMVNSGRTYLLRVINAVMNEEQFFGIAGHSLTVVGQDAAYIKPITTNYIMITPGQTMDILVTANRPRSYYYIASHSFADGAGIAF DNTTTTAIFQYNGNYGRPSSIPLPVLPIFNDTAAAENYTSRVRGLASRDHPVNVPQTVNRRLYITIALNRLPCTEATCTGPNRLFASMNNVSFAAKPIDI LQAYYRSINGVFDADFPSEPQKYFNFTGNVTSINVATARGTKVTMLNYGEAVEIVFQGTNLLAEMNHPIHLHGFSFYLVGHGKGNFNNETDPKSYNLIDP PEINTVALPRSGWAAIRFVANNPGVWFIHCHLEKHSSWGMDTVLIVRNGRTRAQSMRPPPATLPSCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088700 [exp]	0	1
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088600 [exp]	1.00	0.9827
AT2G44260			Plant protein of unknown funct...		Potri.018G087400 [exp]	2.82	0.9466
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088290 [exp]	4.00	0.9533
AT3G52450		PUB22	plant U-box 22 (.1)		Potri.006G202600 [exp]	4.89	0.9463
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088358 [exp]	4.89	0.9510
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Potri.001G298300 [exp]	6.32	0.9403	3
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Potri.002G191900 [exp]	8.24	0.9151	GA2.6
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	11.83	0.9463	WRKY40.2
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G054100 [exp]	12.40	0.9380
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G047000 [exp]	13.49	0.9460	ERF7

Compare expression of checked genes

Potri.019G088700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.