Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11170 245 / 6e-72 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 237 / 7e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16860 229 / 4e-66 RPP5, RPP4 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 224 / 1e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G51630 224 / 1e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G04220 221 / 5e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41550 222 / 9e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G48770 220 / 5e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40910 219 / 6e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 214 / 2e-61 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G097100 [exp] 668 / 0 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098500 [exp] 665 / 0 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097300 [exp] 664 / 0 AT4G16860 272 / 8e-81 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098800 [exp] 640 / 0 AT4G16860 255 / 3e-75 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 635 / 0 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G095932 [exp] 622 / 0 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098900 [exp] 600 / 0 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 597 / 0 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 439 / 3e-144 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 333 / 2e-104 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 289 / 2e-87 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 287 / 9e-87 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 249 / 6e-73 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041060 [exp] 248 / 1e-72 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015453 [exp] 232 / 3e-71 AT1G27170 282 / 5e-84 transmembrane receptors;ATP binding (.1.2) Lus10017419 [exp] 233 / 6e-71 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10014829 [exp] 240 / 9e-71 AT5G17680 441 / 1e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015648 [exp] 242 / 1e-70 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10032101 [exp] 229 / 4e-70 AT1G27170 270 / 6e-80 transmembrane receptors;ATP binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G097580.1 pacid=42773060 polypeptide=Potri.019G097580.1.p locus=Potri.019G097580 ID=Potri.019G097580.1.v4.1 annot-version=v4.1 ATGGCAATGTTTTTCTTGTTTCTCTCTATCTTTTTGTTTGCACATATCTGGAGATTCATCATACGAAGCCGTCATATTTCTCCATCGCCATCTACTCCTT CCACCTTAACCACCGCCCAGCCACAAGTAATTAAATATGATGTCTTCCTTAGTTTCAGGGGCGAAGACACTCGTTTTGATTTTACCAGCCACCTCCATGC TGCTTTGAAACGGAAACAAATCCTAACTTTCATCGATGATCAGCAAGTGAGAGGAGATGAGATACCGGAATCACTTCTGAGAACAATTGAAGAGGCCAAG CTTTCTGTGCCTGTTTTTTCTGAAAACTATGCATCTTCCAAATGGTGCTTGGAGGAGCTTGTAAAGATTTTTGAGCGTAGAAAAAATAATGGACAGATAG TTATTCCGGTATTCTACAAGGTGAATCCATCCCATGTAAGAAGCTTTCGAGATGCATTTGCTGGATTGATAAAGAATAAAACTTTGACGGAGTACAAAGA GAAGAGCTTCAGAGACGCTTTGACGGATACAGCCAATCTATCTGGATGGACCTTAGGGAAGTCTGAGCCGGAGTCTGAATTTATTGACAAAATCGTTGGA GATGTTATGAACAAATTGCAAGCCATGTCTTCAAGTCACACTAGGGGTCTATTTGGAATTGATGTTCGTGTTAACAAAGTTGAGTCTTTGTTAAATATGG AATCTCCAGATGTTCTCATTGTAGGGATATGGGGAATGGGTGGTATCGGTAAAACAACGATTGCTGAAGTTGTGTGCAACAAGGTTTGTTCTCTATTTGA AGGAATCTTTTTTGTAAATTTTAGGCAACAATTAAAAGCACATCCCATGGCTGATCTGCGAAGAAGATTTCTTTCACGGCTGCTTGGCCAAGAAATTATG AACAGGGGCTCCTTGAGTTTTCGAGATTCTTTTGTGAGGGATAGACTTCGTCGCATAAAGGTTTTGATTGTTCTGGATGATGTGGATAATTTAATGTGTT TGGAAGAATGGAGAGATTTGCTTGATGGACGAAACAGTTCATTTGATGCGGGCAGTAAAGTTCTCATAACAAGTAGGGACAAGCAAGTGCTTAATAATGT AGTAGACGACACATACGAGGTTGAGGGGTTGAACTATGAAGAATCTCTTCAACTCTTTAGCTCAAAAGCCTTGAAGAATTGCAACCCCACAATTGATCAT AGACACTTAATAGCACAGATTGTAAGTCTTGTACAAGGCAATCCGTTGGCTCTTATAGTTTTGGGTTCCTCTCTCTATGGTAAAAGCATCAAAGAATGA
AA sequence Show only first row Show all	>Potri.019G097580.1 pacid=42773060 polypeptide=Potri.019G097580.1.p locus=Potri.019G097580 ID=Potri.019G097580.1.v4.1 annot-version=v4.1 MAMFFLFLSIFLFAHIWRFIIRSRHISPSPSTPSTLTTAQPQVIKYDVFLSFRGEDTRFDFTSHLHAALKRKQILTFIDDQQVRGDEIPESLLRTIEEAK LSVPVFSENYASSKWCLEELVKIFERRKNNGQIVIPVFYKVNPSHVRSFRDAFAGLIKNKTLTEYKEKSFRDALTDTANLSGWTLGKSEPESEFIDKIVG DVMNKLQAMSSSHTRGLFGIDVRVNKVESLLNMESPDVLIVGIWGMGGIGKTTIAEVVCNKVCSLFEGIFFVNFRQQLKAHPMADLRRRFLSRLLGQEIM NRGSLSFRDSFVRDRLRRIKVLIVLDDVDNLMCLEEWRDLLDGRNSSFDAGSKVLITSRDKQVLNNVVDDTYEVEGLNYEESLQLFSSKALKNCNPTIDH RHLIAQIVSLVQGNPLALIVLGSSLYGKSIKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11170			Disease resistance protein (TI...		Potri.019G097580 [exp]	0	1
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G098800 [exp]	2.44	0.9019
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037000 [exp]	3.46	0.8701
AT5G17680			disease resistance protein (TI...		Potri.019G098500 [exp]	5.74	0.8952
AT4G12010			Disease resistance protein (TI...		Potri.019G097100 [exp]	7.48	0.8849
AT5G17680			disease resistance protein (TI...		Potri.019G098900 [exp]	8.66	0.8746
					Potri.001G076800 [exp]	10.39	0.8037
AT5G17680			disease resistance protein (TI...		Potri.019G097800 [exp]	11.22	0.8472
					Potri.017G077100 [exp]	12.36	0.8170
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037101 [exp]	13.49	0.8001
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Potri.019G095866 [exp]	16.12	0.8005

Compare expression of checked genes

Potri.019G097580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.