Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 495 / 6e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 474 / 8e-150 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 452 / 1e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 450 / 5e-143 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 453 / 6e-143 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46470 445 / 2e-139 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 442 / 1e-137 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT1G65850 436 / 4e-137 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G63880 433 / 5e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63870 432 / 9e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G097100 [exp] 1702 / 0 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 1338 / 0 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 1295 / 0 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 1289 / 0 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098700 [exp] 986 / 0 AT5G17680 379 / 3e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 956 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 868 / 0 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 841 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G095932 [exp] 827 / 0 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 607 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 584 / 0 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 556 / 0 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 552 / 0 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 497 / 8e-158 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10038249 [exp] 473 / 7e-151 AT5G17680 445 / 4e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015648 [exp] 465 / 2e-146 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 453 / 1e-145 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 461 / 4e-145 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041078 [exp] 438 / 2e-140 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF07725 [poplar] [flax] LRR_3 Leucine Rich Repeat CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G098500.1 pacid=42773957 polypeptide=Potri.019G098500.1.p locus=Potri.019G098500 ID=Potri.019G098500.1.v4.1 annot-version=v4.1 ATGGCGATGTTTTTCTTGTTTCTCTCTATCTTTTTGTTTGTTTATATCTGGAGATTCATCATACGAAGCCGTCATATTTCTCCATCCCCATCTACTCCTT CCACCTTAACCACCGCCCAGCCACAAGTAATTAAATATGATGTCTTCCTTAGTTTCAGGGGAGAAGACACTTGTTCTGATTTTACCAGTCACCTCTATGC TGCTTTGAACCGGAAACAAATCCTAACTTTCATAGATTATCAGCTTGTGAGAGGAGATGAGATTTCGGCATCACTTCTGAGAACAATTGAAGAGGCCAAG CTTTCTGTGATTGTTTTTTCTGAAAATTATGCATCTTCCAAATGGTGCTTGGAGGAGCTTGCAAAGATTTTTGAACGTAGAAAAAATAATGGACAGATAG TTATTCCGGTATTCTACCAGGTGGATCCATCCCATGTAAGAAATCAAACAGGGAGGTTTGGGGATGCATTTGCTAGACTTATAAAGAAGAAAGCTTTGAC GATGGACAAAGAGCAGAGCTTCAGAGACGCTTTGACGGATGCAGCCAATCTATCTGGATGGAGCTTAGGGAAGTCTGAGCTGGAGTCCGAATTTATTGAA AAGATCGTTGGAGATGTTTTGAACAAATTGCATGCTATGTCTTCAAGTCACACTACGGGTTTATTTGGAATTGATGTTCGCATTCACAAAGTCGAGTCTT TGTTAAATATGGAATCTCAAGATGTTCTCATTGTAGGAATATGGGGAATGAGTGGTATAGGTAAGACAACGATTTCTGAAGCTGTGTGCAACAAGGTTTG TTCTCGATTTGAAGGAATCTTTGTTGCAAACTTTAGGCAAGAATTAAAAACACGTCCCATGGCTGATTTGCAAAGAAGCTTTCTTTCACAACTGCTTGGC CAAGAAATTCTGAAAATGGGCTCCTTGAGTTTTCGAGATTCTTTTGTGAGGGATAGACTTCGTCGTAAAATGGTTTTTATTGTTCTTGATGATGTGGATG ATTTAATGCCTTTGGAAGAATGGAAAGAATTGCTTCATGGACGACACAGTTCATTTGGTCCGGGCAGTAAAGTTCTCATAACAAGTAGGGACAAGCAAGT GCTTAATAATATAGTAGACGAAACATACGAGGTTGAGAGGTTGAACTATGAAGAAGCTCTTCAACTCTTTAGCTCAAAAGCCTTGAAGAATTGCATCCCC ACAATTGATCATAGAGACCTGATAAAAAGGATTGCAAGTCATGTACAAGGCAATCCGTTGGCTCTTATAGTTTTGAGTTCCTCTCTCTATGGTAAAAGCC CAGAAGAATGGTACAGTGCATTGAATAAACTAGCTCAGAACCCTCGAATCGAAAATGCATTGAGAATTAGTTACAATGGGTTGTATCAAGAACAACAATC CATATTTCTTGATATAGCACATTTCTTCAGAAAATTTGAGCAAAACCAAGCTACAAGAATATTAGATGGCTTTTATGGCCGGCCTGTGATTTTTGATATA AGCATGCTCATTGATAAGTGTCTCATAACTACTTCTCGGAACATGCTAGAAATACATGATTTACTACAAGAAATGGCATTTAGCATTGTTCGTGCAGAAT CTAAGTTTCCTGGCAAACGTAGCAGGTTGTGTCATCTTACTGACATCGTTCATGTATTGGAGGAAAATAAGGGAACTGAAGAAATTGAAGGCATATCTTT GGACATGTCCAGGTTATCGAGACAGATACACTTGAAATCTGATGCCTTCGCAATGATGGATGGTCTTAGATTTATCAAATTCTTTTTCGGTCATTTGTCC CAAGATAACAAAGATAAAATGCACCTTCCTCCTACTGGCCTCGAATATCTTTCTAATAAGCTGAGATATTTGCACTGGGATGGATTCCCTTCAAAATCCT TGCCGCATGTTTTTTGTGCTGAATATCTTGTCGAGCTTAACTTAAGCAGGAGCAAGGTTGAAAAACTTTGGACCAGAGTACAGGATGTTGGAAATGTACA AAAATTTGTACTATCTTACTCTCCATATTTGACGGAATTGCCAGATCTATCAAAGGCCAGAAATTTGGTGTCCTTACGCCTTGTAGACTGTCCAAGTTTA ACCGAGGTTCCGTTTTCTCTTCAATATCTTGACAAGCTGGAAGAACTTGATCTCAATTTTTGCTATAATCTTAGAAGTTTTCCAATGCTTGATTCAAAGG TTCTCAAAGTACTTTCTATAAGTCGGTGCCTAGATATGACCAAGTGTCCAACGATTTCACAAAATATGAAAAGCTTATATTTAGAGGAAACTTCAATCAA AGAAGTTCCACAATCAATTACTAGCAAGTTGGAAAATCTTGGTCTGCATGGTTGCTCAAAGATCACCAAGTTTCCAGAGATTTCAGGGGATGTAAAAACA TTATATCTAAGTGGAACTGCTATTAAAGAGGTGCCCTCATCAATCCAGTTTCTCACAAGACTTTGCGTATTGGATATGAGTGGTTGCTCAAAACTTGAGA GCTTCCCAGAAATCGCAGTGCCTATGAAATCATTGGTGGATCTTAACTTGAGTAAAACAGGCATTAAAGAGATACCCTCATCATTTAAGCAAATGATATC TTTGAGAAGTCTAGGGTTAGATGGAACGCCTATTGAAGAGCTACCCTTATCAATCAAAGATATGGTATGTTTGAGATATCTGGCTTTGCATGGAACACAT ATTAAAGCGTTACCTGAGCTTCCACCTTCGCTGAGGTCTCTAACAACACATGACTGTGCATCACTAGAAACCATGATATCAACCATCAATATCGGCAGAT TATGGGACTGA
AA sequence Show only first row Show all	>Potri.019G098500.1 pacid=42773957 polypeptide=Potri.019G098500.1.p locus=Potri.019G098500 ID=Potri.019G098500.1.v4.1 annot-version=v4.1 MAMFFLFLSIFLFVYIWRFIIRSRHISPSPSTPSTLTTAQPQVIKYDVFLSFRGEDTCSDFTSHLYAALNRKQILTFIDYQLVRGDEISASLLRTIEEAK LSVIVFSENYASSKWCLEELAKIFERRKNNGQIVIPVFYQVDPSHVRNQTGRFGDAFARLIKKKALTMDKEQSFRDALTDAANLSGWSLGKSELESEFIE KIVGDVLNKLHAMSSSHTTGLFGIDVRIHKVESLLNMESQDVLIVGIWGMSGIGKTTISEAVCNKVCSRFEGIFVANFRQELKTRPMADLQRSFLSQLLG QEILKMGSLSFRDSFVRDRLRRKMVFIVLDDVDDLMPLEEWKELLHGRHSSFGPGSKVLITSRDKQVLNNIVDETYEVERLNYEEALQLFSSKALKNCIP TIDHRDLIKRIASHVQGNPLALIVLSSSLYGKSPEEWYSALNKLAQNPRIENALRISYNGLYQEQQSIFLDIAHFFRKFEQNQATRILDGFYGRPVIFDI SMLIDKCLITTSRNMLEIHDLLQEMAFSIVRAESKFPGKRSRLCHLTDIVHVLEENKGTEEIEGISLDMSRLSRQIHLKSDAFAMMDGLRFIKFFFGHLS QDNKDKMHLPPTGLEYLSNKLRYLHWDGFPSKSLPHVFCAEYLVELNLSRSKVEKLWTRVQDVGNVQKFVLSYSPYLTELPDLSKARNLVSLRLVDCPSL TEVPFSLQYLDKLEELDLNFCYNLRSFPMLDSKVLKVLSISRCLDMTKCPTISQNMKSLYLEETSIKEVPQSITSKLENLGLHGCSKITKFPEISGDVKT LYLSGTAIKEVPSSIQFLTRLCVLDMSGCSKLESFPEIAVPMKSLVDLNLSKTGIKEIPSSFKQMISLRSLGLDGTPIEELPLSIKDMVCLRYLALHGTH IKALPELPPSLRSLTTHDCASLETMISTINIGRLWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G098500 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Potri.019G097100 [exp]	1.00	0.9818
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G098800 [exp]	2.44	0.9526
AT5G17680			disease resistance protein (TI...		Potri.019G098900 [exp]	2.82	0.9526
					Potri.001G076800 [exp]	4.35	0.8518
AT5G17680			disease resistance protein (TI...		Potri.019G098700 [exp]	5.29	0.9504
AT5G17680			disease resistance protein (TI...		Potri.019G097800 [exp]	5.65	0.9355
AT4G11170			Disease resistance protein (TI...		Potri.019G097580 [exp]	5.74	0.8952
AT3G14470			NB-ARC domain-containing disea...		Potri.001G025400 [exp]	8.00	0.8637
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009500 [exp]	10.53	0.8099
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128900 [exp]	11.66	0.8160

Compare expression of checked genes

Potri.019G098500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.