Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 379 / 2e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G38350 335 / 2e-101 Disease resistance protein (NBS-LRR class) family (.1) AT4G12010 342 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40060 337 / 7e-101 Disease resistance protein (NBS-LRR class) family (.1) AT5G46270 339 / 1e-100 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 338 / 1e-100 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 329 / 3e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46470 325 / 1e-95 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G14370 323 / 1e-95 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 324 / 6e-95 disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G098900 [exp] 1452 / 0 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 1356 / 0 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 1303 / 0 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G113701 [exp] 1021 / 0 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 999 / 0 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 751 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 734 / 0 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 672 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G095932 [exp] 566 / 0 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005588 [exp] 446 / 1e-139 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 443 / 2e-138 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 426 / 3e-133 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041078 [exp] 419 / 3e-133 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 403 / 9e-125 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 395 / 7e-121 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 363 / 5e-109 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10038249 [exp] 344 / 5e-103 AT5G17680 445 / 4e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 332 / 2e-97 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10000121 [exp] 313 / 2e-97 AT5G17680 277 / 1e-82 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF07725 [poplar] [flax] LRR_3 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.019G098700.1 pacid=42774137 polypeptide=Potri.019G098701.1.p locus=Potri.019G098700 ID=Potri.019G098700.1.v4.1 annot-version=v4.1 ATGGCGGGTCTACTTGGAATTGATGTTCGTGTTAGCAAAGTTGAGTCTTTGTTAAATATGGAATCTCCAGATGTTCTCATTGTAGGGATATGGGGAATGG GTGGTATCGGTAAGTCAACGATTGCTGAAGCTGTATGCAACAAGGTTCGTTCTCGATTTGAAGGAATATTTTTTGCAAACTGTAGGCAACAATCTGATTT GCGAAGAAGATTTCTTAAACGGCTGCTTGGCCAAGAAACTCTGAACACTATGGGCTCGTTGAGTTTTCGAGATTCTTTTGTGAGGGATAGACTTCGTCGA ATAAAGGTTTTTATTGTTCTGGATGATGTGGATAATTCAATGGCTTTGGAAGAATGGAGAGATTTGCTTGATGGACGAAACAGTTCATTTGGTCCGGGCA GTAAAGTTCTCATAACAAGTAGGGACAAGCAAGTGCTTAGTAACATAGTAGACGAAACATACAAGGTTGAGGGGTTGAACTATGAAGACGCTATTCAACT CTTTAACTCAAAAGCCTTGAAGATTTGCATCCCCACAATTGATCAAAGACACTTGATAGAACAGATTGCATGGCATGTACGAGGCAATCCGTTGGCTCTT AAAGTTTTGGGTTCCTCTCTTTATGGTAAAAGCATCGAAGAATGGCGCAGTGCATTGAAGAAACTAGCTCAGGACCCTCAAATCGAAAGGGCGTTGAGAA TTAGTTACGATGGGTTGGATTCAGAACAAAAATCCATATTTCTTGACATAGCACATTTCTTCAATAGAATGAAGCCAAACGAAGCAACAAGAATATTAGA TTGCCTTTATGGTCGGTCTGTGATTTTCGATATAAGCACGCTCATTGATAAGTGTCTCATAACTACTTTTTATAACAATATACGAATGCATGATTTACTA CAAGAAATGGCATTTAACATTGTTCGTGCAGAATCTGATTTTCCTGGCGAACGTAGCAGGTTATGTCATCCTCCTGATGTCGTTCAAGTATTGGAGGAAA ATAAGGGAACTCAAAAAATTAAAGGCATATCTTTGAGCACGTTCATGTTATCGAGACAGATACACTTGAAATCTGATGCCTTCGCAATGATGGATGGTCT TCGATTTCTCAATTTCCGTCAACATACTTTATCCATGGAAGATAAAATGCACCTTCCTCCTACCGGCCTCGAATATCTTCCTAATAAGCTGAGATATTTG AAATGGTGTGGATTCCCTTCGAAATCCTTGCCGCCATCTTTTCGTACTGAACGCCTTGTGGAGCTTCACCTATGCAACAACAAGCTTGTAAAACTTTGGA CAGGAGTGCAGGATGTTGGAAATTTAAGAACAATTGACCTATCTGACTCTCCATATTTGACGGAATTGCCAGATCTATCAATGGCCAAAAATTTACAGTG CTTAAGACTTGCGAAGTGTTCAAGTTTAACCGAGGTTCCGTCATCTCTTCAATATCTTGACAAGCTGGAAGAAATTGATCTCTTTTCTTGCTATAATCTT AGAAGTTTTCCGATGCTTGATTCAAAGGTTCTCAGAAAACTTGTTATAAGTCGGTGCCTAGATGTGACCAAGTGTCCAACGATTTCACAAAATATGGTAT GGTTACAGTTGGAACAAACTTCAATCAAAGAAGTTCCACAATCAGTTACTAGCAAGTTGGAACGTCTTTGTCTAAATGGTTGCCCAGAGATCACCAAGTT TCCAGAGATTTCAGGGGATATAGAAAGATTAGAACTAAAGGGAACTACTATTAAAGAGGTGCCCTCATCAATCCAGTTTCTCACAAGACTCCGTGATTTG GATATGAGTGGTTGCTCAAAACTTGAGAGCTTCCCAGAAATCACAGGGCCTATGAAATCTTTGGTGGAGCTTAACTTGAGTAAAACAGGCATTAAAAAGA TACCCTCATCATCATTTAAGCATATGATATCTTTGAGGCGTCTAAAATTAGATGGAACGCCTATTAAAGAGTTACCTGAGCTTCCCCCTTCGCTTTGGAT TCTAACAACACATGACTGTGCATCACTAGAAACCGTGATATCAATCATCAAAATCAGAAGTTTATGGGATGTATTGGATTTTACAAATTGCTTCAAATTG GATCAGAAACCGCTGGTAGCAGCAATGCATTTGAAAATTCAGTCCGGAGATAAGATCCCACACGGCGGAATTAAAATGGTTCTACCGGGGAGTGAAATTC CAGAATGGTTCGGTGAAAAAGGAATTGGATCTTCACTCACCATGCAGTTGCCGTCCAATTGTCATCAGCTCAAGGGAATTGCTTTCTGCCTTGTCTTTCT ACTCCCTCTTCCCTCCCATGACATGCCTTACAAAGTCGATGATCTTTTTCCTGTTGAATTTCGTTTTGATTACCATGTTAAGAGTAAAAACGGTGAGCAT GATGGTGATGATGAAGTCGTCTTAGTTTCCATGGAAAAATGTGCTCTAACATGTAACATGAAGACATGTGACTCGGATCACATGGTTCTACATTACGAGC TCGAGAACATATTGGTATATTTTTTACGTAAATATTCTGGCAATGAAGTTACATTTAAATTCTACCACCAAGAAGTGGACAACATGGCGAGGAGGGTAGG TCATGAGATCCAAAGGCCGATCCAAAGGCCTAATTTCGAGTTGAAAAGCTGTGGGGTGTATCTGCACTTTGATGAAAATCTACCGGCGGACAAAAGTTCA GAAGAAAATTGA
AA sequence Show only first row Show all	>Potri.019G098700.1 pacid=42774137 polypeptide=Potri.019G098701.1.p locus=Potri.019G098700 ID=Potri.019G098700.1.v4.1 annot-version=v4.1 MAGLLGIDVRVSKVESLLNMESPDVLIVGIWGMGGIGKSTIAEAVCNKVRSRFEGIFFANCRQQSDLRRRFLKRLLGQETLNTMGSLSFRDSFVRDRLRR IKVFIVLDDVDNSMALEEWRDLLDGRNSSFGPGSKVLITSRDKQVLSNIVDETYKVEGLNYEDAIQLFNSKALKICIPTIDQRHLIEQIAWHVRGNPLAL KVLGSSLYGKSIEEWRSALKKLAQDPQIERALRISYDGLDSEQKSIFLDIAHFFNRMKPNEATRILDCLYGRSVIFDISTLIDKCLITTFYNNIRMHDLL QEMAFNIVRAESDFPGERSRLCHPPDVVQVLEENKGTQKIKGISLSTFMLSRQIHLKSDAFAMMDGLRFLNFRQHTLSMEDKMHLPPTGLEYLPNKLRYL KWCGFPSKSLPPSFRTERLVELHLCNNKLVKLWTGVQDVGNLRTIDLSDSPYLTELPDLSMAKNLQCLRLAKCSSLTEVPSSLQYLDKLEEIDLFSCYNL RSFPMLDSKVLRKLVISRCLDVTKCPTISQNMVWLQLEQTSIKEVPQSVTSKLERLCLNGCPEITKFPEISGDIERLELKGTTIKEVPSSIQFLTRLRDL DMSGCSKLESFPEITGPMKSLVELNLSKTGIKKIPSSSFKHMISLRRLKLDGTPIKELPELPPSLWILTTHDCASLETVISIIKIRSLWDVLDFTNCFKL DQKPLVAAMHLKIQSGDKIPHGGIKMVLPGSEIPEWFGEKGIGSSLTMQLPSNCHQLKGIAFCLVFLLPLPSHDMPYKVDDLFPVEFRFDYHVKSKNGEH DGDDEVVLVSMEKCALTCNMKTCDSDHMVLHYELENILVYFLRKYSGNEVTFKFYHQEVDNMARRVGHEIQRPIQRPNFELKSCGVYLHFDENLPADKSS EEN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G098700 [exp]	0	1
AT1G63860			Disease resistance protein (TI...		Potri.019G097720 [exp]	3.00	0.9672
AT5G17680			disease resistance protein (TI...		Potri.019G098900 [exp]	3.16	0.9652
AT5G17680			disease resistance protein (TI...		Potri.019G097800 [exp]	3.46	0.9548
AT5G46470		RPS6	RESISTANT TO P. SYRINGAE 6, di...		Potri.019G097640 [exp]	3.46	0.9661
AT5G17680			disease resistance protein (TI...		Potri.019G098500 [exp]	5.29	0.9504
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014342 [exp]	5.65	0.8990
AT2G34930			disease resistance family prot...		Potri.001G043800 [exp]	7.07	0.8733
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G148266 [exp]	8.66	0.9129
AT4G12010			Disease resistance protein (TI...		Potri.019G097100 [exp]	8.77	0.9443
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.016G076000 [exp]	9.16	0.8603

Compare expression of checked genes

Potri.019G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.