Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 477 / 9e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46450 468 / 3e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 465 / 3e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 457 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46470 452 / 4e-140 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 444 / 7e-137 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 436 / 6e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 431 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G08450 439 / 3e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G65850 433 / 7e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G097800 [exp] 1630 / 0 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 1596 / 0 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098700 [exp] 1418 / 0 AT5G17680 379 / 3e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 1270 / 0 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 1269 / 0 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 936 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 922 / 0 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 850 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G095932 [exp] 812 / 0 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026201 [exp] 593 / 0 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 580 / 0 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 568 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 508 / 4e-162 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015350 [exp] 489 / 3e-153 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 483 / 2e-151 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 451 / 2e-138 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 442 / 1e-135 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10038249 [exp] 433 / 8e-134 AT5G17680 445 / 4e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 436 / 9e-133 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF07725 [poplar] [flax] LRR_3 Leucine Rich Repeat CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G098900.1 pacid=42774603 polypeptide=Potri.019G098900.1.p locus=Potri.019G098900 ID=Potri.019G098900.1.v4.1 annot-version=v4.1 ATGGCGTTGTTTTTCTTGTTTCTCTCTATCTTTTTGTTTGTTTTTATCTGGAGATTCATCATACGAAACTGTCATATATCTCCATCGCCATCTACTCCTT CCACCTTAACCACCGCCCAGCCACAAGTAATTAAACATGATGTCTTCCTTAGTTTCAGGGGAGAAGACACCCGTGGTGGTTTTACCAGCCACCTCTATGC TGCTTTGGACCGGAAACAAATCCGAGCTTTCATAGATTATCAGCTTCGGAGAGGAGATGAGATTTCGGCATCACTTCTGAGAACAATTGAAGAGGCCAAG CTTTCTGTGATTGTTTTTTCTGAAAACTATGCATCTTCCAAATGGTGCTTGGAGGAGCTTGCAAAGATTATTGAGCGTAGAAGAAATAATGGACAGATAG TTATTCCAGTATTCTACAAGGTGGATCCATCCCATGTAAGAAATCAAACACGAAGCTTTGGAGATGCATTGGCTAGATTGATAAAGAAGAAAGCTTTGAC GATGGACAAAGAGCAGAGCTTCAGAGACGCTTTGACGGCTGCAGCCAATCTATCTGGATGGAGCTTAGGGAATTCTGAGCTGGAGTTTGAATTTATTAAG AATATCGTTGGAGATGTTTTGGAAAAATTGCATGCCATGTCTTCAAGTCACACTATGGCGGGTCTACTTGGAATTGATGTTCATGTTAGCAAAGTTGAGT CTTTGTTAAATATAGAATCTCCAGATGTTCTCATTGTAGGGATATGGGGAATGGGTGGTATCGGTAAGACAACGATTGCTGAAGCTGTATGCAACAAGGT TCATTCTCAATTTGAAAGAATCTTTTTTGCAAACTGTAGGCAACAATCTGATTTGCCAAGAAGATTTCTTAAACGGCTGCTTGGCCAAGAAACTCTGAAC ACTATGGGCTCCTTGAGTTTTCTAGATTCTTTTGTGAGGGATAGACTTCGTCGAATTAAGGTTTTCATTGTTCTGGATGACGTGGATGATTTAATGCGTT TGGATGAATGGAGAGATTTGCTTGATGGACGAAACAATTCATTTGGTTCGGGCAGTAAAGTTCTCATAACAAGTAGGAACAAGCAACTGCTTAAGAATGT AGTTGATGAGACATACGAGGTTGAGGGGTTGAACTATGCAGACGCTATTCAACTCTTTAGCTCAAAAGCCTTGAAGAATTGCATCCCCACAATTGATCAA AGACACTTGATAATAAAGAATGTAAGGCATGTACAAGGCAATCCGTTGGCTCTTAAAGTTTTGGGTTCCTCTCTCTATGATAAAAGCATCGAAGAATGGC GCAGTGCATTGAAGAAACTAGCTCTGGACCCTCAAATCGAAAGGGCGTTGAGAATTAGTTACGATGGGTTGGATTTAGAACAAAAACCCATATTTCTTGA CATAGCACATTTCTTCAAAGGACGGATGCAAGGCGAAGCAACAGGAATATTAGATTGCTTATATGGTCAGTCTGTGAATTTTGATATAAGCACGCTTATT GATAAGTGTCTCATAAGTACTGCAAAGGATTACTTTCATCGTGACAAGCTAGAAATGCATGATTTACTACAAGAAATGGCATTTAACATTGTTCGTGCAG AATCTGATTTTCCTGGCGAACGTAGCAGGTTAAGTCATCCTCCTGATGTCGTTCAATTATTGGAGGAAAATAAGGGTACTCAACAAATTAAAGGCATATC TTTGGACATGTCCATGTTATCGAGACAGATACACTTGAAATCTGATGCATTCGCAATGATGGATGGTCTTCGATTTCTCAATATCTATTTCAGTCGTTAC TCCAAAGAAGATAAAATATTGCACCTTCCTCCTACTGGCCTTGAATATCTTCCTAATGAGCTGAGATATTTTTTATGGTCTAGATTCCCTTTGAAATCCT TGCCGCCATCTTTTCGTGCTGAACACCTTGTCGAGCTTCACCTAAGGAAAAGCAAGCTTGTAAAACTTTGGACAGGAGTAAAGGATGTTGGGAATTTAAG AAGAATTGACCTATCTGACTCTCCATATTTGACGGAATTGCCAGATCTATCAATGGCCAAAAATTTAGTGTCCTTAGATCTTACGGACTGTCCAAGTTTA ATCGAGGTTCCGTCATCTCTTCAATATCTTGACAAGCTGGAAAAAATTTATCTCTTTCGTTGCTATAATCTTAGAAGTTTTCCAATGCTTGATTCAAAGG TTCTCAGATTCCTTCTTATAAGTCGGTGCCTGGATGTGACCACGTGTCCAACGATTTCACAAAATATGGAATGGTTATGGTTGGAACAAACTTCAATCAA AGAAGTTCCACAATCAGTTACTGGCAAGTTGGAACGTCTTTGTCTAAGTGGTTGCCCAGAGATCACCAAGTTTCCAGAGATTTCAGGGGATATAGAAATA TTAGATCTAAGGGGAACTGCTATTAAAGAGGTGCCCTCATCAATCCAATTTCTCACAAGACTCGAAGTGTTGGATATGAGTGGTTGCTCAAAACTTGAGA GCCTCCCAGAAATCACAGTGCCTATGGAATCTTTGCATAGCCTTAAGTTGAGTAAAACAGGCATTAAAGAGATACCCTCATCATTAATTAAGCATATGAT ATCTTTGACGTTTCTAAATTTAGATGGAACGCCTATTAAAGCGTTACCTGAGCTTCCCCCTTCGCTTCGTTATCTAACAACACATGACTGTGCATCACTA GAAACCGTGACATCAAGCATCAATATCGGTAGATTAGAGTTAGGATTGGATTTTACAAATTGCTTCAAATTGGATCAGAAACCACTGGTAGCAGCAATGC ATTTGAAAATTCAGTCCGGAGAGGAGATCCCAGATGGCGGTATTCAAATGGTACTACCGGGGAGTGAAATTCCAGAATGGTTCGGTGACAAAGGAATTGG ATCTTCACTCACCATGCAGTTGCCGTCCAATTGTCATCAGCTCAAGGGAATTGCTTTCTGCCTTGTCTTTCTACTCCCTCTTCCCTCCCATGACATGCCT TATGAAGTCGATGATGATATTGATGTTAATTTATATCTTGATTACCATGTTAAGAGTAAAAACGGTGAGCATGATGGTGATGATGAAGTCGTCTTAGCTT CCGGGGAAAGATGTCATCTAACATCTAAAATGAAGACATGTGACTCGGATCACATGGTTCTACATTACATGGCTCTACGTTACGAGCTCGAATTGGTAAA TCGTTTACGTAAATATTCCGGCAATGAAGTTACATTTAAATTCTACCACCATGAAGTGGTCAACATGGCGAGGAAGGTAGGTAATGAGATCCAAAGGCCT TTCAAGTTGAAAAGCTGTGGGGTGTATCTGCACTTTGGTGAAAATCTACCGGCGGACACGGACGGGTACAGATATTTACCCGTTAACAAACAACGGTTCA GAAGAAAATAA
AA sequence Show only first row Show all	>Potri.019G098900.1 pacid=42774603 polypeptide=Potri.019G098900.1.p locus=Potri.019G098900 ID=Potri.019G098900.1.v4.1 annot-version=v4.1 MALFFLFLSIFLFVFIWRFIIRNCHISPSPSTPSTLTTAQPQVIKHDVFLSFRGEDTRGGFTSHLYAALDRKQIRAFIDYQLRRGDEISASLLRTIEEAK LSVIVFSENYASSKWCLEELAKIIERRRNNGQIVIPVFYKVDPSHVRNQTRSFGDALARLIKKKALTMDKEQSFRDALTAAANLSGWSLGNSELEFEFIK NIVGDVLEKLHAMSSSHTMAGLLGIDVHVSKVESLLNIESPDVLIVGIWGMGGIGKTTIAEAVCNKVHSQFERIFFANCRQQSDLPRRFLKRLLGQETLN TMGSLSFLDSFVRDRLRRIKVFIVLDDVDDLMRLDEWRDLLDGRNNSFGSGSKVLITSRNKQLLKNVVDETYEVEGLNYADAIQLFSSKALKNCIPTIDQ RHLIIKNVRHVQGNPLALKVLGSSLYDKSIEEWRSALKKLALDPQIERALRISYDGLDLEQKPIFLDIAHFFKGRMQGEATGILDCLYGQSVNFDISTLI DKCLISTAKDYFHRDKLEMHDLLQEMAFNIVRAESDFPGERSRLSHPPDVVQLLEENKGTQQIKGISLDMSMLSRQIHLKSDAFAMMDGLRFLNIYFSRY SKEDKILHLPPTGLEYLPNELRYFLWSRFPLKSLPPSFRAEHLVELHLRKSKLVKLWTGVKDVGNLRRIDLSDSPYLTELPDLSMAKNLVSLDLTDCPSL IEVPSSLQYLDKLEKIYLFRCYNLRSFPMLDSKVLRFLLISRCLDVTTCPTISQNMEWLWLEQTSIKEVPQSVTGKLERLCLSGCPEITKFPEISGDIEI LDLRGTAIKEVPSSIQFLTRLEVLDMSGCSKLESLPEITVPMESLHSLKLSKTGIKEIPSSLIKHMISLTFLNLDGTPIKALPELPPSLRYLTTHDCASL ETVTSSINIGRLELGLDFTNCFKLDQKPLVAAMHLKIQSGEEIPDGGIQMVLPGSEIPEWFGDKGIGSSLTMQLPSNCHQLKGIAFCLVFLLPLPSHDMP YEVDDDIDVNLYLDYHVKSKNGEHDGDDEVVLASGERCHLTSKMKTCDSDHMVLHYMALRYELELVNRLRKYSGNEVTFKFYHHEVVNMARKVGNEIQRP FKLKSCGVYLHFGENLPADTDGYRYLPVNKQRFRRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G098900 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.019G097800 [exp]	1.73	0.9606
AT5G17680			disease resistance protein (TI...		Potri.019G098500 [exp]	2.82	0.9526
AT5G17680			disease resistance protein (TI...		Potri.019G098700 [exp]	3.16	0.9652
AT4G12010			Disease resistance protein (TI...		Potri.019G097100 [exp]	4.47	0.9506
AT1G63860			Disease resistance protein (TI...		Potri.019G097720 [exp]	5.47	0.9474
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G098800 [exp]	5.91	0.9375
AT4G11170			Disease resistance protein (TI...		Potri.019G097580 [exp]	8.66	0.8746
AT5G46470		RPS6	RESISTANT TO P. SYRINGAE 6, di...		Potri.019G097640 [exp]	10.39	0.9012
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037101 [exp]	10.67	0.8439
					Potri.001G076800 [exp]	13.41	0.8222

Compare expression of checked genes

Potri.019G098900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.