Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 596 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 528 / 2e-164 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16890 496 / 2e-153 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 485 / 4e-150 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 475 / 2e-147 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 477 / 5e-147 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G08450 472 / 4e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 468 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 468 / 5e-144 disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 465 / 9e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G097800 [exp] 1466 / 0 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 1296 / 0 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 1292 / 0 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098900 [exp] 1281 / 0 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098700 [exp] 986 / 0 AT5G17680 379 / 3e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 909 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G095932 [exp] 854 / 0 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.017G010800 [exp] 786 / 0 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 784 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 597 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 556 / 6e-177 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 548 / 4e-174 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 543 / 9e-174 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015648 [exp] 508 / 8e-159 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 496 / 3e-154 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 495 / 2e-153 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041060 [exp] 491 / 1e-151 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 478 / 8e-148 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010221 [exp] 473 / 1e-146 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF07725 [poplar] [flax] LRR_3 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G113701.2 pacid=42774325 polypeptide=Potri.019G113701.2.p locus=Potri.019G113701 ID=Potri.019G113701.2.v4.1 annot-version=v4.1 ATGATGTCTCCATCGCCATCTACTCCTTCCACCTTAACCACCGCCCAGCCACAAGGAATTAAATATGATGTCTTCCTTAGTTTCAGGGGAGAAGACACTC GTGTTGGTTTTACCAGCCACCTCTATGCTGCTTTGAAACGGGAACAAATCCTAACTTTCATAGATAATCAGCTTGTGAGAGGAGATGAGATTTCGGCATC ACTTCTGAGAACAATTGAAGAGGCCAAGCTTTCTGTGATTGTTTTTTCTGCAAACTATGCATCTTCCAAATGGTGCTTGGAGGAGCTTGCTAAGATTTTT GAGCGTAGAAAAAATAATGGACAGATAGTTATTCCGGTATTCTACCAGGTGGATCCATCCCATGTAAGAAATCAAGCAGGAAGCTTTGGGGATGCATTGG CTAGATTGATAAAGGAGAAAGCTTTGACGATGGACACAGAGCAGAGCTTCGGAGACGCTTTGACGGATGCAGCCAATCTATCTGGATGGCGCTTAGGGAA TTCTGAGCTGGAGGCTGAATTTATTGAGAAAATCGTTGGAGATGTTTTGGAAAAATTGCATGCCATGTCTTCAAGTCACACTATGGCGGGTCTATTTGGA ATTGGTGTTCGTGTTAGCGAAGTTGAGTCTTTGTTAAATATGGAATCTCCAGATGTTCTCATTGTAGGCATATGGGGAATGGGTGGTATCGGTAAGACAA CGATTGCTAAAGCTGTGTACGACAACGTTCGTTCTCGATTTCAAGGAATCTTTTTTGCAAACTTTAGGCAACAATCTGATTTGCAAAGAAGCTTTCTTTC ACAGCTGCTTGGCCAAGAAATTCTGAACAGGGGCCTCTTGAGTTTTCAAGATATTTTTGTGAGGAATAGACTTTGTCGCAAAAAGGTTTTTATTGTTATG GATGATGTGGATAATTCAATGGCTTTGGAAGAATGGAGAGATTTGCTTGATGGACGAAACAGTTCATTTGGCCCGGGCAGTAAAGTTCTCATAACAAGTA GGGACAAGCAAGTGCTTAATAATGTAGTTGATGAGACATACGAGGTTGAGGGGTTGAACTATGAAGAAGCTATTCAACTCTTTAGCTTGAAAGCCTTGAA GAATTGCTTCCCCACAATTGATCAAAGAGACTTGATAAAACAGATTGCAAGGCATGTACAAGGCAATCCGTTGGCCCTTAAAGTTTTGGGTTCCTCTTTC TATGGTAAAAGCATAGAAGAATGGCGCAGTGCATTGAATAAACTAGCTCAGGACCCCCAAATCGAAAAGGCGTTGAGAATTAGTTATGATGGGTTGGATT CAGAACAGAAATCCATATTTCTTGACATAGCACATTTCTTGAGAAGATGGAAGAAAAACCAAGCAATAAGAATATTAGATTGCTTTTATGGTCGGTCTGT GACGTTCGATATAAGCACGCTCATTGATAAGTGTCTCATAACTACTGATAACAGTGTTGATGGCTATGAAAGGCTAGAAATGCATGATTTACTACGAGAA ATGGCATTTAACATTGTTCGTGCGGAATACAAGTTTCCTGGCAAACGTAGCAGGTTGTGTCATCCTCCTGATGTCGTTCAAGTATTGGAGGAAAATAAGG GAACTGAAGAAATTGAAGGCATATCTTTGGACATGTCCAAGTTATCAAGACAGATACACTTGAAATCTGATGCCTTTGAAATGATGGATGGTCTTCGATT TCTCAATTTCTATGGTCGTCCTTACTCCCAAGATGATAAAATGCACCTTCCTCCTACTGGCCTCGAATATCTTCCTAATAAGCTGAGATATTTGAGATGG GATGGATTCCCTTCGAAATCCTTGCCGCTAGCTTTTCGTGCTGAACACCTTGTCGAGCTTCACCTACGCGAAAGCAAGCTTGTAAAACTTTGGACAGGAG TAAAGGATGTTGGAAATTTAAGAACAATCGACCTATCTAAATCTTCATATTTGACGGAATTGCCAGATCTATCAATGGCCAAAAATTTAGTGTCCTTAAG ACTTAAGGACTGTCCAAGTTTAACCGAGGTTCCGTCATCTCTTCAATATCTTGACAAGCTGGAATATATTAATCTCCGTTGTTGCTATAATCTTAGAAGT TTTCCAATGCTTTATTCAAAGGTTCTCAGAAAACTTTCTATATATCAGTGCCTAGATTTGACCACGTGTCCAACGATTTCACAAAATATGAAAAGCTTAC GTTTGTGGGGAACTTCAATCAAGGAAGTTCCACAATCAATTACTGGCAAGTTGAAAGTCCTTGATCTATGGGGTTGCTCAAAGATGACCAAGTTTCCAGA GGTTTCAGGGGATATAGAAGAATTATGGCTAAGCGAAACTGCTATTCAAGAGGTGCCCTCATCAATCCAGTTTCTCACAAGACTCCGCGAATTGGAAATG AATGGTTGCTCAAAACTTGAGAGCCTCCCAGAAATCACAGTGCCTATGGAATCTTTGGAGTATCTTGGCTTGAGTGAAACAGGCATTAAAGAGCTACCCT CATCAATCCAGTCTCTCACAAGACTCCGTGATTTGGATATGAGTGGTTGCTCAAAACTTGAAAGCCTGCCAGAAATCACAGTGCCTATGGAATCTTTGGT GGAGCTTAACTTGAGTAAAACGGGCATTAAAGAGCTACCTTCGATATCATTTAAGCATATGACATCTTTGAAGATTCTAAAATTAGATGGAACGCCACTT AAAGAGCTACCGTCATCAATCCAGTTTCTCACAAGACTCCAATCGTTGGATATGAGTGGTTGCTCAAAACTTGAGAGCTTCCCACAAATCACAGTGCCTA TGGAATCTTTGGTGGAGCTTAACTTGAGTAAAACGGGCATTAAAGAGATACCTTCGATATCATTTAAGCATATGACATCTTTGAAGATTCTAAAATTAGA TGGAACGCCACTTAAAGAGCTACCGTCATCAATCCAGTTTCTCACAAGACTCCAATCGTTGGATATGAGTGGTTGCTCAAAACTTGAGAGCTTCCCAGAA ATCACAGTGCCTATGGAATCTTTGGCGGAGCTTAACTTGAGTAAAACGGGCATTAAAGAGCTACCATTGTCAATCAAAGATATGGTATGTTTGAAAAAAC TGACTTTGGAGGGAACGCCTATTAAAGAGCTACCCTTGTCAATCAAAGATATGGTATGTTTGGAAGAACTGACTTTGCATGGAACACCTATTAAAGCGTT ACCTGAGCTCCCCCCTTCGCTGAGGTATCTACGTACACGTGACTGTTCATCACTAGAAACCGTGACATCAATCATCAATATCGGTAGATTACAGTTACGA TGGGATTTTACAAATTGCTTCAAAGTGGATCAGAAACCACTGATAGAGGCAATGCATTTGAAAATTCAGTCCGGAGAGGAGATCCCACGTGGGGGAATAA TTGAAATGGTTCTACCGGGGAGTGAAATTCCAGAATGGTTCGGTGACAAAGGAGTTGGATCTTCACTCACCATACAGTTGCCCTCAAATTGTCATCAGCT CAAGGGAATTGCTTTCTGCCTTGTCTTTCTACTCCCTCTTCCATCCCGTGACTTATATTTTGATGTCCATGTTAAGTATAAGAACGGTGAGCATTTCGCT TCCCGGGAAAGACAGGTTATATCATATAACTTGGGGACATGTGACTCAGATCACATGATTCTACAATACAGATTGGTAAATCAATTGCCTGAAAATTATG GCAATGAAGTTACATTTAAATTCTACCTCCTTGAAGAGGACAACAAGGGAAGGATGGTAGGTGATGAGAGCCAAAGGCCTTTCGAGTTGAAAAGTTGGGG GGTGTATCTGCACTTTGATGAAAATCTACCTGCGGACACGGATCTTCCTTAA
AA sequence Show only first row Show all	>Potri.019G113701.2 pacid=42774325 polypeptide=Potri.019G113701.2.p locus=Potri.019G113701 ID=Potri.019G113701.2.v4.1 annot-version=v4.1 MMSPSPSTPSTLTTAQPQGIKYDVFLSFRGEDTRVGFTSHLYAALKREQILTFIDNQLVRGDEISASLLRTIEEAKLSVIVFSANYASSKWCLEELAKIF ERRKNNGQIVIPVFYQVDPSHVRNQAGSFGDALARLIKEKALTMDTEQSFGDALTDAANLSGWRLGNSELEAEFIEKIVGDVLEKLHAMSSSHTMAGLFG IGVRVSEVESLLNMESPDVLIVGIWGMGGIGKTTIAKAVYDNVRSRFQGIFFANFRQQSDLQRSFLSQLLGQEILNRGLLSFQDIFVRNRLCRKKVFIVM DDVDNSMALEEWRDLLDGRNSSFGPGSKVLITSRDKQVLNNVVDETYEVEGLNYEEAIQLFSLKALKNCFPTIDQRDLIKQIARHVQGNPLALKVLGSSF YGKSIEEWRSALNKLAQDPQIEKALRISYDGLDSEQKSIFLDIAHFLRRWKKNQAIRILDCFYGRSVTFDISTLIDKCLITTDNSVDGYERLEMHDLLRE MAFNIVRAEYKFPGKRSRLCHPPDVVQVLEENKGTEEIEGISLDMSKLSRQIHLKSDAFEMMDGLRFLNFYGRPYSQDDKMHLPPTGLEYLPNKLRYLRW DGFPSKSLPLAFRAEHLVELHLRESKLVKLWTGVKDVGNLRTIDLSKSSYLTELPDLSMAKNLVSLRLKDCPSLTEVPSSLQYLDKLEYINLRCCYNLRS FPMLYSKVLRKLSIYQCLDLTTCPTISQNMKSLRLWGTSIKEVPQSITGKLKVLDLWGCSKMTKFPEVSGDIEELWLSETAIQEVPSSIQFLTRLRELEM NGCSKLESLPEITVPMESLEYLGLSETGIKELPSSIQSLTRLRDLDMSGCSKLESLPEITVPMESLVELNLSKTGIKELPSISFKHMTSLKILKLDGTPL KELPSSIQFLTRLQSLDMSGCSKLESFPQITVPMESLVELNLSKTGIKEIPSISFKHMTSLKILKLDGTPLKELPSSIQFLTRLQSLDMSGCSKLESFPE ITVPMESLAELNLSKTGIKELPLSIKDMVCLKKLTLEGTPIKELPLSIKDMVCLEELTLHGTPIKALPELPPSLRYLRTRDCSSLETVTSIINIGRLQLR WDFTNCFKVDQKPLIEAMHLKIQSGEEIPRGGIIEMVLPGSEIPEWFGDKGVGSSLTIQLPSNCHQLKGIAFCLVFLLPLPSRDLYFDVHVKYKNGEHFA SRERQVISYNLGTCDSDHMILQYRLVNQLPENYGNEVTFKFYLLEEDNKGRMVGDESQRPFELKSWGVYLHFDENLPADTDLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G113701 [exp]	0	1
					Potri.007G076600 [exp]	1.00	0.9620
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088222 [exp]	2.44	0.9598
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G027400 [exp]	3.87	0.9426
					Potri.002G182100 [exp]	6.48	0.9091
AT4G39700			Heavy metal transport/detoxifi...		Potri.005G079800 [exp]	11.74	0.8978
AT4G11170			Disease resistance protein (TI...		Potri.019G095932 [exp]	12.16	0.8902
					Potri.002G021100 [exp]	12.48	0.9342
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G004900 [exp]	12.84	0.9084
AT1G70740			Protein kinase superfamily pro...		Potri.008G132300 [exp]	13.11	0.8854
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.005G224100 [exp]	14.07	0.9208

Compare expression of checked genes

Potri.019G113701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.