Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05100 277 / 1e-91 MYB ATMYB74 myb domain protein 74 (.1) AT4G21440 276 / 1e-90 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 266 / 6e-88 MYB ATMYB41 myb domain protein 41 (.1) AT5G16770 234 / 1e-74 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 233 / 2e-74 MYB ATMYB107 myb domain protein 107 (.1) AT5G15310 232 / 7e-74 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT1G34670 231 / 5e-73 MYB ATMYB93 myb domain protein 93 (.1) AT5G54230 227 / 5e-72 MYB ATMYB49 myb domain protein 49 (.1) AT3G01140 225 / 3e-70 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT5G10280 218 / 2e-68 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G148600 [exp] 538 / 0 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 351 / 7e-120 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 332 / 2e-112 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.001G408700 [exp] 283 / 1e-93 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 281 / 1e-92 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.017G086300 [exp] 234 / 9e-74 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.005G074500 [exp] 231 / 3e-73 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.007G093900 [exp] 229 / 2e-72 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 227 / 6e-72 AT1G34670 309 / 7e-104 myb domain protein 93 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039743 [exp] 281 / 3e-94 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018418 [exp] 283 / 1e-93 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 263 / 1e-85 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10006740 [exp] 259 / 6e-83 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10020085 [exp] 254 / 3e-82 AT4G21440 315 / 2e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10033003 [exp] 230 / 3e-72 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10041142 [exp] 219 / 4e-69 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 219 / 6e-69 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10026620 [exp] 217 / 2e-68 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10014784 [exp] 216 / 4e-68 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G118200.1 pacid=42773100 polypeptide=Potri.019G118200.1.p locus=Potri.019G118200 ID=Potri.019G118200.1.v4.1 annot-version=v4.1 ATGGGAAGAGTACCTTGCTGTGACAAAAATGGACTCAAGAAAGGTCCTTGGACCCCAGAAGAAGATCACAAGCTCATCAGTTTTATTCAACTTCACGGAC CTGGCAACTGGCGGTCCCTCCCCAAAAATGCAGGGCTTCAAAGATGTGGAAAGAGCTGTCGCCTTCGTTGGACAAATTACCTGAGACCTGATATCAAGAG AGGAAGATTTTCATTTGAAGAAGAAGAGACTATAATTCAACTTCACAGTGTTTTGGGAAACAAGTGGTCAGCTATAGCAGCTCGTTTGCCAGGAAGAACT GACAATGAAATCAAGAATTACTGGAATACTCATATAAGAAAAAGGTTGCTTAGAAATGGAATTGATCCTGTGACTCATGCCCCACGTCTTGATCTTCTTG ACCTATCCTCCATTATAAGTTCAGCTTTGTGCAACCCATCAACACTTCTCAATCTGTCAACCTTGGTGGGCAACACTCAAGCCCTACTAAATCCTAATAT TTTAAGACTAGCCACCACTCTATCATCATTGAAACAAGAAAATTCGGACATGTTTTTGCAGAAACTACAAGAAAACCAGCTTTTCAACCCACTGTTACAA AACCAAGATGTCCCTTCATTATTTTCACAACCTAGGCAGTTTCATAATCTAGCTCAACAAGTTCCTGCTTGTACTACTGCTACTACATCTACTGGCGGGT TTATAGACCAAACAACACAAGTCATGCAAGCAAATGTAGAAGGGTTTTCGTCGAATCCGACGAGCACTTTCAACTGCCAAAATTCCCCAGAAAACTTCGT GCCTTCAAGTTTGAATGAGAGTTTGGTTTCACTGCCAAACTTTTATTGCAATGGTACTACTACAGATCCTACAGTTCCTGAACCTGGAGAGCACTCAGGA TTCCAATCAGCAAACAATGGATATCAGAACTTCAGCATCGACTCAGTTATATCAACGCCTTTAATGAGCCCGGATCCATTGAACTCATCATCAACTTATC TCAACAGCAGCAGTACTGAGGATGAGAGGGAGTGCTACAGCAGCTTGTTGAAGTTTGAAATTCCTGAGAGTTTGAACATTGATGATTTCCTGTAA
AA sequence Show only first row Show all	>Potri.019G118200.1 pacid=42773100 polypeptide=Potri.019G118200.1.p locus=Potri.019G118200 ID=Potri.019G118200.1.v4.1 annot-version=v4.1 MGRVPCCDKNGLKKGPWTPEEDHKLISFIQLHGPGNWRSLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRT DNEIKNYWNTHIRKRLLRNGIDPVTHAPRLDLLDLSSIISSALCNPSTLLNLSTLVGNTQALLNPNILRLATTLSSLKQENSDMFLQKLQENQLFNPLLQ NQDVPSLFSQPRQFHNLAQQVPACTTATTSTGGFIDQTTQVMQANVEGFSSNPTSTFNCQNSPENFVPSSLNESLVSLPNFYCNGTTTDPTVPEPGEHSG FQSANNGYQNFSIDSVISTPLMSPDPLNSSSTYLNSSSTEDERECYSSLLKFEIPESLNIDDFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05100	MYB	ATMYB74	myb domain protein 74 (.1)		Potri.019G118200 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.010G085400 [exp]	1.41	0.9625
AT4G35160			O-methyltransferase family pro...		Potri.011G059600 [exp]	2.44	0.9538	FOMT8,OOMT2.20
AT1G05450			Bifunctional inhibitor/lipid-t...		Potri.010G085200 [exp]	2.44	0.9612
					Potri.019G090900 [exp]	3.46	0.9389
					Potri.008G017001 [exp]	4.58	0.9382
AT2G38870			Serine protease inhibitor, pot...		Potri.010G075400 [exp]	4.89	0.9428	BGIT.1
AT2G32150			Haloacid dehalogenase-like hyd...		Potri.010G089300 [exp]	6.78	0.8967	Pt-NOD33.1
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.003G201600 [exp]	7.14	0.9103
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134200 [exp]	7.74	0.9129
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.005G006800 [exp]	8.36	0.9403

Compare expression of checked genes

Potri.019G118200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.