Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16770 171 / 1e-51 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G21440 167 / 7e-50 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT1G22640 164 / 7e-50 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G38620 163 / 4e-49 MYB AtMYB4 myb domain protein 4 (.1) AT4G28110 163 / 4e-49 MYB ATMYB41 myb domain protein 41 (.1) AT3G23250 162 / 1e-48 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT2G31180 160 / 2e-48 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT5G10280 163 / 3e-48 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT4G34990 161 / 3e-48 MYB ATMYB32 myb domain protein 32 (.1) AT3G02940 162 / 4e-48 MYB ATMYB107 myb domain protein 107 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149100 [exp] 379 / 4e-134 AT3G23250 176 / 4e-54 myb domain protein 15 (.1.2) Potri.019G118800 [exp] 240 / 2e-79 AT1G16490 174 / 2e-53 myb domain protein 58 (.1) Potri.013G149200 [exp] 196 / 3e-62 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 189 / 9e-60 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.008G166700 [exp] 173 / 8e-53 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.002G038500 [exp] 170 / 9e-52 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.011G125900 [exp] 172 / 1e-51 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G224100 [exp] 170 / 1e-51 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.004G033100 [exp] 170 / 1e-50 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033737 [exp] 190 / 2e-58 AT4G21440 168 / 6e-49 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018518 [exp] 183 / 5e-57 AT1G79180 167 / 6e-51 myb domain protein 63 (.1) Lus10039734 [exp] 179 / 2e-56 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10033738 [exp] 176 / 3e-54 AT4G28110 184 / 2e-57 myb domain protein 41 (.1) Lus10039735 [exp] 175 / 5e-54 AT5G65230 176 / 5e-54 myb domain protein 53 (.1) Lus10031607 [exp] 175 / 5e-54 AT4G28110 182 / 2e-56 myb domain protein 41 (.1) Lus10018547 [exp] 171 / 2e-52 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10003557 [exp] 169 / 5e-51 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10039772 [exp] 166 / 1e-50 AT4G21440 175 / 5e-53 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10033889 [exp] 167 / 2e-50 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G118700.1 pacid=42774050 polypeptide=Potri.019G118700.1.p locus=Potri.019G118700 ID=Potri.019G118700.1.v4.1 annot-version=v4.1 ATGGTCAAAGCAACCTTGGTTGATAAAAATGGACTCAGGAAAGGTGCATGGAGTAAAGAAGAAGATGATAAGTTGAGAGTTTATGTTCAGAAATATGGCC ACTGGAATTGGCGACAACTTCCCAGGTTTGCTGGTTTATCAAGGTGTGGCAAGAGTTGCAGATTAAGATGGATGAACTATCTCCGGCCGGACGTGAAGCG TGGCAATTTCTCTGATGAAGAGGATAATTTGATCATTCAAATGCATGAAGAACTTGGAAATAAATGGTCTATCATTGCTGGGAAATTACCTGGAAGAACA GACAATGAGATTAAAAATCATTGGCACACCAACTTGAGCAAGAGAGTGAAGCAAAGCCAATCAGTTTCTTCTGAGTTGGTGAATAAAGAGCAGTCAAGTG AAACTTCAGAGTCTGAAGATAGTCAAGCAGAAAAGTCCGAAACTGAAAGTGTTTCTGTCAATACTCCATCAGAACCTGATCGTCACCCGAAAATTGTAGA GAACATTCCTTCACCTCAAGAAATATCCTGCAGTGAGTTATCCTCCATGAATAATGATTATGTGTCAGGCATGAATGGTGCTGCAGATAGTTTCTCTCCA ATGGAAATATTTCAAGATTCAGGTTTCTGGAACCAGCCATTTATAGCCGACAACAATGACAGCCAAGATGGTTATCATTCATTGTTATTCACAGAAGAAG TATACATGCCATCCTATCCATTCAACTATGACGATGATAGTATGAATTGGATCCAGCAAATGATGCAGGAACTGCAAGATAGTTATTAA
AA sequence Show only first row Show all	>Potri.019G118700.1 pacid=42774050 polypeptide=Potri.019G118700.1.p locus=Potri.019G118700 ID=Potri.019G118700.1.v4.1 annot-version=v4.1 MVKATLVDKNGLRKGAWSKEEDDKLRVYVQKYGHWNWRQLPRFAGLSRCGKSCRLRWMNYLRPDVKRGNFSDEEDNLIIQMHEELGNKWSIIAGKLPGRT DNEIKNHWHTNLSKRVKQSQSVSSELVNKEQSSETSESEDSQAEKSETESVSVNTPSEPDRHPKIVENIPSPQEISCSELSSMNNDYVSGMNGAADSFSP MEIFQDSGFWNQPFIADNNDSQDGYHSLLFTEEVYMPSYPFNYDDDSMNWIQQMMQELQDSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.019G118700 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G099100 [exp]	11.04	0.8597
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.011G058800 [exp]	11.74	0.7902	PtrcGrx_C9,GRX.1
					Potri.014G065300 [exp]	13.56	0.9007
AT3G04600			Nucleotidylyl transferase supe...		Potri.009G159300 [exp]	15.36	0.7313
AT2G31690			alpha/beta-Hydrolases superfam...		Potri.014G150700 [exp]	17.57	0.8971
AT2G38890			unknown protein		Potri.008G044500 [exp]	23.23	0.8950
					Potri.014G163733 [exp]	23.66	0.8954
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Potri.010G203200 [exp]	26.83	0.8114
					Potri.001G029000 [exp]	30.33	0.8699
AT5G11390		WIT1	WPP domain-interacting protein...		Potri.004G111350 [exp]	31.89	0.8939

Compare expression of checked genes

Potri.019G118700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.