Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16770 177 / 1e-53 MYB ATMYB9 myb domain protein 9 (.1.2) AT1G16490 174 / 2e-53 MYB ATMYB58 myb domain protein 58 (.1) AT3G23250 172 / 2e-52 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT1G79180 171 / 9e-52 MYB ATMYB63 myb domain protein 63 (.1) AT4G28110 170 / 9e-52 MYB ATMYB41 myb domain protein 41 (.1) AT2G31180 168 / 2e-51 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT4G21440 170 / 6e-51 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT3G12820 166 / 7e-51 MYB ATMYB10 myb domain protein 10 (.1) AT1G06180 166 / 1e-50 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT3G02940 167 / 6e-50 MYB ATMYB107 myb domain protein 107 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149100 [exp] 258 / 2e-86 AT3G23250 176 / 4e-54 myb domain protein 15 (.1.2) Potri.019G118700 [exp] 249 / 5e-83 AT5G16770 170 / 4e-51 myb domain protein 9 (.1.2) Potri.013G149200 [exp] 222 / 2e-72 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 216 / 3e-70 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G224100 [exp] 190 / 1e-59 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.002G038500 [exp] 189 / 5e-59 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.008G166700 [exp] 181 / 6e-56 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.004G033100 [exp] 175 / 1e-52 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.010G114000 [exp] 170 / 2e-52 AT4G38620 243 / 6e-81 myb domain protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018518 [exp] 216 / 8e-70 AT1G79180 167 / 6e-51 myb domain protein 63 (.1) Lus10033737 [exp] 196 / 5e-61 AT4G21440 168 / 6e-49 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039734 [exp] 181 / 7e-57 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10033738 [exp] 182 / 1e-56 AT4G28110 184 / 2e-57 myb domain protein 41 (.1) Lus10039771 [exp] 178 / 1e-55 AT1G34670 184 / 5e-57 myb domain protein 93 (.1) Lus10031607 [exp] 179 / 3e-55 AT4G28110 182 / 2e-56 myb domain protein 41 (.1) Lus10039735 [exp] 177 / 9e-55 AT5G65230 176 / 5e-54 myb domain protein 53 (.1) Lus10018547 [exp] 175 / 7e-54 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10003557 [exp] 176 / 9e-54 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10042561 [exp] 173 / 9e-54 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G118800.1 pacid=42773185 polypeptide=Potri.019G118800.1.p locus=Potri.019G118800 ID=Potri.019G118800.1.v4.1 annot-version=v4.1 ATGGTGAGAGCTCCTTACTTTGACAAAAATGGAGTAAAGAAAGGTGCATGGAGTGAAGAAGAAGATGATAAGTTAAGAGAACATATTGAGAAATATGGCC TTTGGAACTGGCGTGAAATCCCCAAGTTTGCAGGATTATCAAGGTGTGGCAAGAGTTGCAGACTAAGATGGATGAATTATCTCCGCCCGGATGTAAAACA TGGCAACTACACCAAAGAAGAAGAAGATTTAATCCTCAAATTACATGAAAAACATGGAAATAAATGGTCCATAATTGCTGCAAAATTACCAGGAAGAACA GATAATGAAGTGAAAAACTACTGGCACGCCCATCTGAAGAAGCGAACGGTGGAAAAACAAAACACATTGGTGTTGAAAGAGAAATCTAGTGGTTTTACTT CTGAAAGTGAAGGCAGCCAGATGAATAAAGAAATGGAAGCTAAAACTGTAGTTTCCTACACTCCCTCTAACCCAATTTTAGAGAGCACTCCATTATCCCC AGAAACATCTTGCAGTGAGCTCTCCAACTTGAGCACTGATTTTGCTCCAAAACTTCCTGTATCAGCTGGCACAAACAGGAATAATATTGCAGAAGATGTT CTCTCTTCAGTGCCAACATTTGACGAGTCCATTGGAAATTTTTGGACTGAGCCATTTGTAGCAGATAGTGCCTACGACCAAGATAATTTTCCAGGGCTAT CTTTTTATCAAGAGGAGCCCTTTGTTTCATACTATGATGATGGCATAGATTTCTATTATGAAATGATGCAAGAACTGCCAGGGAACAATTAG
AA sequence Show only first row Show all	>Potri.019G118800.1 pacid=42773185 polypeptide=Potri.019G118800.1.p locus=Potri.019G118800 ID=Potri.019G118800.1.v4.1 annot-version=v4.1 MVRAPYFDKNGVKKGAWSEEEDDKLREHIEKYGLWNWREIPKFAGLSRCGKSCRLRWMNYLRPDVKHGNYTKEEEDLILKLHEKHGNKWSIIAAKLPGRT DNEVKNYWHAHLKKRTVEKQNTLVLKEKSSGFTSESEGSQMNKEMEAKTVVSYTPSNPILESTPLSPETSCSELSNLSTDFAPKLPVSAGTNRNNIAEDV LSSVPTFDESIGNFWTEPFVADSAYDQDNFPGLSFYQEEPFVSYYDDGIDFYYEMMQELPGNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16490	MYB	ATMYB58	myb domain protein 58 (.1)		Potri.019G118800 [exp]	0	1
AT4G31980			unknown protein		Potri.003G206501 [exp]	4.58	0.7983
AT2G31820			Ankyrin repeat family protein ...		Potri.017G006800 [exp]	7.21	0.8187
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.007G031100 [exp]	8.48	0.7505
AT3G60810			unknown protein		Potri.002G148400 [exp]	11.13	0.7856
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.017G138900 [exp]	31.74	0.7653
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.006G038900 [exp]	34.42	0.7764
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.003G067600 [exp]	64.15	0.7025	Pt-LOX3.2
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150800 [exp]	69.91	0.7011	Pt-SP1.1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.018G104700 [exp]	79.14	0.6996
					Potri.003G153332 [exp]	93.16	0.6979

Compare expression of checked genes

Potri.019G118800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.