Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30210 845 / 0 LAC3 laccase 3 (.1) AT5G07130 832 / 0 LAC13 laccase 13 (.1) AT2G40370 731 / 0 LAC5 laccase 5 (.1) AT5G05390 721 / 0 LAC12 laccase 12 (.1) AT5G09360 560 / 0 LAC14 laccase 14 (.1) AT2G29130 543 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G60020 540 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G38080 531 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G03260 528 / 0 LAC11 laccase 11 (.1) AT5G58910 507 / 8e-176 LAC16 laccase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152700 [exp] 1044 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.010G183600 [exp] 761 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073700 [exp] 760 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 746 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073800 [exp] 737 / 0 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.007G023300 [exp] 571 / 0 AT5G03260 889 / 0.0 laccase 11 (.1) Potri.006G094100 [exp] 568 / 0 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.001G206200 [exp] 568 / 0 AT5G09360 796 / 0.0 laccase 14 (.1) Potri.001G054600 [exp] 561 / 0 AT5G60020 905 / 0.0 laccase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017427 [exp] 725 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10042249 [exp] 655 / 0 AT2G30210 696 / 0.0 laccase 3 (.1) Lus10007531 [exp] 641 / 0 AT2G40370 799 / 0.0 laccase 5 (.1) Lus10009841 [exp] 636 / 0 AT5G05390 811 / 0.0 laccase 12 (.1) Lus10040957 [exp] 627 / 0 AT5G05390 810 / 0.0 laccase 12 (.1) Lus10007532 [exp] 616 / 0 AT2G40370 804 / 0.0 laccase 5 (.1) Lus10017426 [exp] 612 / 0 AT2G40370 805 / 0.0 laccase 5 (.1) Lus10027747 [exp] 564 / 0 AT3G09220 707 / 0.0 laccase 7 (.1) Lus10035546 [exp] 563 / 0 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10023189 [exp] 561 / 0 AT5G03260 930 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.019G124300.1 pacid=42774530 polypeptide=Potri.019G124300.1.p locus=Potri.019G124300 ID=Potri.019G124300.1.v4.1 annot-version=v4.1 ATGGAGACTCATAACTTGACTGTAAAGCAATTATATTGTTGCCTCCTTCTTAGCATTTTTGTAATCATCAGTTTCCAAGCATCTTCCTCTGAACCAGAAA CTCACTACCATGAGTTTGTTATTCAAGCTAAGCCAGTGAGGAGGCTGTGCAGAACTCATAATACAATTACAGTTAATGGACTATTTCCAGGGCCAACACT GGAAGTGCGTGACGGTGATACTCTTGTGATCAAGGCAATAAATAATGCTAGATACAATGTTACCCTCCACTGGCATGGAGTCCGACAGCTGCGAAATCCA TGGGCAGATGGACCTGATCGCGTGACACAATGCCCTATCCAACCAGGAAGGAGTTATACCTACCGGTTCACAATTGAAAATCAAGAGGGGACTTTGTGGT GGCATGCTCATAGCAGATGGCTTAGAGCCACTGTTTATGGTGCTCTAATCATTCATCCTAAATTGGGTTCCCCATATTCATTCCCAATGCCCATAAGAGA AATTCCCATTCTTCTTGGGGAGTGGTGGGTCAGGAACCCCATGGATGTTTTGAGGCTGGCAGATTTCACAGGTGCAGCACCAAATGTGTCTGATGCTTAT ACCATCAATGGCCAACCCGGCGACCTCTACAGATGCTCCAAGCAAGAAACTGTGAGATTTCCTGTGGATCCTGGCGAAACAATCCTCCTAAGGGTCATAA ATTCTGCCATGAACCAAGAACTCTTCTTTGCAGTGGCCAACCATATACTGACAGTAGTTGCTGTTGATGCTGCCTGCACCATGCCTTTCGCAACCTCATT CATTATGATAGCTCCTGGTCAGACAACCAATGTCCTTCTCACTGCTGATCAAACACCAGGTCACTACTACATGGCAGCTCATGCCTATAACTCAGCCAAT GCACCTTTTGACAATACAACTACAACTGCAATCCTTGAATACAAATCTGCTCCTTGCAATTCCAACAAAGGGAAGTCCTCAACACCTATCTTCCCACAAC TGCCAGGCTTTAATGACACAAACAGTGCAATTGCCTTCACTTCCAGTCTAAGGAGCCCTTCCAAGGTTAATGTCCCTCTTCAGATTGATGAAAACCTGTT TTTCACAGTGGGGTTCGGACTCATCAACTGCACCAATCCTAATAGCCCCCGCTGCCAAGGTCCAAATGGAACTCGTTTCGCCGCTAGCATAAATAATGTG TCTTTTGTACTCCCAACAAGAAACTCCTTAATGCAGGCCTACTACCAAGGCCAACCTGGAGTCTTTACGACAGATTTTCCACCTGTTCCCCCCGTAAAAT TCGATTACACTGGCAACGTCAGCCGAGGACTATGGCAGCCTGTTAAAGCAACTAAGCTTTACAAATTGAAATTTGGTGCAAAGGTACAAATAGTCTTCCA GGATACCAGTACAGTCACGGTTGAGGACCACCCAATGCATCTCCATGGACACAATTTCGCGGTTGTAGGGTCAGGCTTTGGTAACTTCAACCCTCAAACA GATCCAGCAAAGTTCAACCTCATTAACCCACCATATAGGAATACCATTGGAAACCCTCCTGGTGGATGGGTAGCCATCCGGTTTGTGGCTGATAATCCAG GGATTTGGTTGCTGCACTGTCACCTAGATTCACATCTCAATTGGGGTCTGGCTATGGCTTTCTTAGTTGAGAATGGAGTTGGCAATTTGCAGTCAGTACA GCCCCCACCACTTGATCTGCCTCAGTGCTAA
AA sequence Show only first row Show all	>Potri.019G124300.1 pacid=42774530 polypeptide=Potri.019G124300.1.p locus=Potri.019G124300 ID=Potri.019G124300.1.v4.1 annot-version=v4.1 METHNLTVKQLYCCLLLSIFVIISFQASSSEPETHYHEFVIQAKPVRRLCRTHNTITVNGLFPGPTLEVRDGDTLVIKAINNARYNVTLHWHGVRQLRNP WADGPDRVTQCPIQPGRSYTYRFTIENQEGTLWWHAHSRWLRATVYGALIIHPKLGSPYSFPMPIREIPILLGEWWVRNPMDVLRLADFTGAAPNVSDAY TINGQPGDLYRCSKQETVRFPVDPGETILLRVINSAMNQELFFAVANHILTVVAVDAACTMPFATSFIMIAPGQTTNVLLTADQTPGHYYMAAHAYNSAN APFDNTTTTAILEYKSAPCNSNKGKSSTPIFPQLPGFNDTNSAIAFTSSLRSPSKVNVPLQIDENLFFTVGFGLINCTNPNSPRCQGPNGTRFAASINNV SFVLPTRNSLMQAYYQGQPGVFTTDFPPVPPVKFDYTGNVSRGLWQPVKATKLYKLKFGAKVQIVFQDTSTVTVEDHPMHLHGHNFAVVGSGFGNFNPQT DPAKFNLINPPYRNTIGNPPGGWVAIRFVADNPGIWLLHCHLDSHLNWGLAMAFLVENGVGNLQSVQPPPLDLPQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30210		LAC3	laccase 3 (.1)		Potri.019G124300 [exp]	0	1
AT2G48140		EDA4	embryo sac development arrest ...		Potri.005G212000 [exp]	4.00	0.9628
AT3G10300			Calcium-binding EF-hand family...		Potri.006G047300 [exp]	4.89	0.9568
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Potri.006G076400 [exp]	8.36	0.9447
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026000 [exp]	8.94	0.9471
AT2G48140		EDA4	embryo sac development arrest ...		Potri.002G050200 [exp]	10.39	0.9467
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026500 [exp]	12.32	0.9430
AT5G07475			Cupredoxin superfamily protein...		Potri.003G150300 [exp]	12.32	0.9494
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025800 [exp]	12.72	0.9421
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.005G257200 [exp]	13.67	0.9362
AT1G17620			Late embryogenesis abundant (L...		Potri.001G200700 [exp]	14.42	0.9204

Compare expression of checked genes

Potri.019G124300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.