Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 387 / 1e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 313 / 2e-94 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 290 / 3e-86 transmembrane receptors;ATP binding (.1.2) AT5G40910 283 / 2e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 274 / 8e-81 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G11170 272 / 1e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 271 / 3e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G58120 270 / 4e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G48770 270 / 2e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G64070 268 / 2e-79 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019710 [exp] 790 / 0 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 786 / 0 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 768 / 0 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 760 / 0 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 757 / 0 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 757 / 0 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 756 / 0 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 752 / 0 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 751 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 372 / 1e-116 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10039850 [exp] 355 / 4e-110 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 352 / 3e-109 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10032101 [exp] 334 / 3e-109 AT1G27170 270 / 6e-80 transmembrane receptors;ATP binding (.1.2) Lus10015453 [exp] 330 / 5e-108 AT1G27170 282 / 5e-84 transmembrane receptors;ATP binding (.1.2) Lus10018616 [exp] 346 / 2e-106 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 344 / 5e-106 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 338 / 5e-104 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 335 / 6e-103 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10004257 [exp] 336 / 1e-102 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.T002428.1 pacid=42782470 polypeptide=Potri.T002428.1.p locus=Potri.T002428 ID=Potri.T002428.1.v4.1 annot-version=v4.1 ATGACAGAGCCACAGTCTTCTCATTCTAGACCAGAAGGGGCCTATGATGTCTTCCTGAGTTTTAGAGGAGAAGATACCCGCAAGACATTTGTAGATCATC TATATACTGCCTTAGTCCAAGCAGGAATCCACACTTTTCGAGATGATGATGAACTTCCTAGAGGAGAAGAAATCTCCGAGCATCTTCTCGAGGCAATTCG AGAATCAAAGATATCCATAGTTGTCTTCTCAAAAGGATATGCTTCTTCTAGATGGTGTCTCAATGAACTTGTAGAGATTCTGAAGTGCAAAAGGAAGAAA ACCGGTCAGATTGTTCTTCCTATATTCTATGACATTGATCCTTCAGATGTGAGAAAACAGACTGGCAGTTTTGCAGAGGCATTTGATAAGCATGAAGAAG AGCGTTTTGAAGAGAAGTTGGTGAAGGAGTGGAGAAAAGCTCTTGAGGATGCCGGAAACCTATCTGGATGGAGTCTCAATGATATGGCAAATGGGCATGA AGCAAAATTTATCAAAGGGATAATCAAGGATGTGTTGAATAAATTACGTCGCGAGTGCTTATATGTTCCTGAGCACCTGGTAGGTATGGATCTTGCTCAC GATATTTATGACTTTCTAAGTACTGCAACAGATGATGTACGCATTGTGGGCATACATGGGATGCCAGGAATAGGAAAGACAACTATAGCAAAAGTTGTAT TTAATCAACTCTGCAATGGACTCGATGGAAGCTGTTTTCTTTCGGATATCAATGAAACATCAAAACAATTCAATGGTCTGGCTCTTTTACAAAAGCAACT TCTTCATGATATTTTAAAACAAGATGTTGCTAACATCAATTGTGTCGATAGAGGAAAGGTTATGATCAAAGATCGACTTTGTCGCAAAAGAGTTCTTGTT GTTGCCGACGATGTGGCTCATCTGGACCAGCTAAATGCTTTGATGGGAGAGCGAAGTTGGTTTGGTCCCGGAAGTAGAGTAATTATTACAACAAGAGATT CAAGTTTACTTCGTAAAGCAGATCTAACATATGAGATTGAAGAATTGGAACCAGACGAGTCCCTTCAGCTTTTCAGCTGGCATGCCTTTAAGGACACCAA GCCAGCAGAAGATTATATTGAGCTTTCGAAGAAAGCTGTTGATTTCTGTGGAGGACTTCCTTTAGCTCTTCAGGTTATAGGAGCTCTTCTGTACAGGGAA AACAATGATAAATGGGAAGGTGAAATTGACAACTTGAGCAGAATTCCAAACCAAGATATTCAAGGAAAGCTTCTAATAAGTTTTGACGCACTTGATGGTG AACTACAAAATGCATTCCTTGATATTGCATTCTTCTTTATTGGTAAAGAGAAAGAATACGTCGCAAAATTGCTAGGAGCCTGTTGCCGTTACAATCCAGA AGTTTTGGAGAAACTCCGTGAAAGGTCTCTGATTGAAATATTGGAAGAGACGGTAACCATGCATGATCTATTACGAGAGATGGGAAGGGAGGTCGTTTTT AAAGCAAAAGGATGCATGGAATGTACTTCAGAAAAACATTATGGAATGTACTTCAGCAGCAGAAGGGTACGGATGTTGTAG
AA sequence Show only first row Show all	>Potri.T002428.1 pacid=42782470 polypeptide=Potri.T002428.1.p locus=Potri.T002428 ID=Potri.T002428.1.v4.1 annot-version=v4.1 MTEPQSSHSRPEGAYDVFLSFRGEDTRKTFVDHLYTALVQAGIHTFRDDDELPRGEEISEHLLEAIRESKISIVVFSKGYASSRWCLNELVEILKCKRKK TGQIVLPIFYDIDPSDVRKQTGSFAEAFDKHEEERFEEKLVKEWRKALEDAGNLSGWSLNDMANGHEAKFIKGIIKDVLNKLRRECLYVPEHLVGMDLAH DIYDFLSTATDDVRIVGIHGMPGIGKTTIAKVVFNQLCNGLDGSCFLSDINETSKQFNGLALLQKQLLHDILKQDVANINCVDRGKVMIKDRLCRKRVLV VADDVAHLDQLNALMGERSWFGPGSRVIITTRDSSLLRKADLTYEIEELEPDESLQLFSWHAFKDTKPAEDYIELSKKAVDFCGGLPLALQVIGALLYRE NNDKWEGEIDNLSRIPNQDIQGKLLISFDALDGELQNAFLDIAFFFIGKEKEYVAKLLGACCRYNPEVLEKLRERSLIEILEETVTMHDLLREMGREVVF KAKGCMECTSEKHYGMYFSSRRVRML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T002428 [exp]	0	1

Compare expression of checked genes

Potri.T002428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.