Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 611 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 455 / 4e-139 transmembrane receptors;ATP binding (.1.2) AT5G17680 453 / 5e-139 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 436 / 7e-131 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 406 / 2e-122 TAO1 target of AVRB operation1 (.1) AT5G46260 400 / 3e-120 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 396 / 2e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 390 / 1e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 386 / 9e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G003285 [exp] 1914 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 1900 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 1064 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 935 / 0 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 890 / 0 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 881 / 0 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 880 / 0 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 875 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 872 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 574 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011104 [exp] 559 / 1e-179 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 560 / 2e-179 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 555 / 2e-178 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 552 / 1e-175 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029722 [exp] 497 / 2e-157 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 492 / 2e-153 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 451 / 1e-138 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014207 [exp] 418 / 6e-127 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 421 / 3e-126 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF07725 [poplar] [flax] LRR_3 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.T005501.1 pacid=42784401 polypeptide=Potri.T005501.1.p locus=Potri.T005501 ID=Potri.T005501.1.v4.1 annot-version=v4.1 ATGGCTTCCACGTGCTCTGAGTCTCCGTTCTTTTCTTCGTCTTCATCCTCTAGACATAGATGGAACTATGATGTTTTTCTAAGTTTTAGAGGAAAAGATA CCCGCAAGAACTTTACAGATCATCTCTATACCGCCTTAATCCAGGCCGGAATTCATACTTTTAGGGATGACAATGAACTTCCTAGAGGAGAAGAAATCTC TCCACAGCTTGTCAAGGCAATTGAAGGATCAAGGATTTCTATAGTGGTCTTCTCCAAACAATACGCTTCCTCTAGATGGTGTCTTGACGAACTGGTAAAG ATTGTTGAGTGCAGGCAAAAGATTGACCAGGTTGTTCTTCCTATATTCTATGATACGGAGCCTTCAGATGTCCGAAAACAGACCGGGAGTTATGCAAAAG CTTTTGATGAACATGAAGAACACTTCAAGGAAGAAATGGAGAAGGTCAACAAGTGGAGAGGAGCTCTTGCAGAAGCGGGAAATCTATCTGGATGGGGTTT AAACAATGAGGCAAATGGATATGAAGCGGAATTCATCAAAAGGATTGTCAGTGATGTAGCTTGTAAACTGGGAAACAAAACCTTGCACGTAGCCAAGCAC CCAGTAGGTATTTATTCCAGGGTTCAGGGAATTATTTCTTTGCTAAAAGGTGCAAAACCTGATGTTGGCATCGTGGGAATACATGGGATAGCTGGAATAG GCAAGACAACAATAGCAAAAGCTGTGTTTAACAAACTTTATTTTGGATTTGAGGGGAGCAGTTTTCTTTTGGATGTCAAGGAAATATCAGATAAGCCGAA TGGTCTGGTTGAATTACAAGAGCGCCTTCTCCATGATATTCTGAAACCAAATGTTTGGAAGCTCAGTAATGTTTATGAAGGAATGAATTTGATCAAAGAA CGACTTCATCGTAAGAAAATTCTTGTAGTTTTTGACGATGTGGACAAAAGGGAACAACTGGAGGCATTGATGGGAGAGAGATGTTGGTTTGGTGCCGGAA GCATAATAATTGTTGTAACTAAGAATAAGCATCTGCTAGCAGAAGTGGGGGTAGATGAAATGTATCATGCTAAAGAATTGGATCGAGATCAGTCTCTTCA GCTTTTCAGTTTGCATGCTTTTAGGGAAACCCATCCAGCAAAGAATTATGAGGAGCTGTCAGGAAAGGTAGTGGACTACTGCAAAGGACTTCCTTTGGCT CTACAAATCTTGGGTTCTCATTTATCCATAAGAGACAAAGCTGGATGGGAAATCGATATTGCCCATTGGAAAAATACTCCGCATGATGATATTCAAGGAA AGCTTAGAGTAAGTTTTGATGCACTGAATGTGGATACAAGCGAGATATTCCTTGATATTGCGTGCTATTTTGTTGGCAGAGACAAAGAATATGTAGCAGA TATAGTAGGTGCTCGTTACGATTGCCATCCAGAAGTAGCTTTCAGAACTCTCATTGGAAGGTCTCTCATAACAATCGACACCGAGAAACAAAATAGGTTA AGGATGCATGATATATTACGAAAGATGGGAAGGGAGATTATTCGTCAAAGGTCGCGTAACCGTCCTGGAAATTGCAGCAGAATTTGGCTTCCCAAAGATG CATACAATGTACTCTCCAAGGAAATGGGAACAGATGCTGTGGAGGGTCTGGCACTAGATGTGCAAGAATCTTTTAACACAAAATCGTTTACAAAAATGAG ACGTTTAAAATTACTCCAAATCAATGAAGCACATCTTGTGGGAAGCTACAGTCTTCTCCCCAAAGAATTGATATGGCTTTGTTGGTCTCGATGCCCTTTG AAATCTCTGCCGTCTGATTTTCACTTAAACGACCTTGTTATACTTGATATGCAAGAAAGTAAAGTACGAAAACTTTGGAAGGGGACTAAGATTCTTACCA AGCTGAAAATCCTCAATCTCAGCTCTTGCCCCTACCTTGCTAAAACGCCGAACTTCCAAGGACTCTCTAGTTTGGAGAGACTCATACTTACAGGATGCCC GAGTTTGGTTGAGGTACATCAATCTATTGGAAATTTGAAGAGCCTTGTTTTGTTGAATTTGGTGTACTGTGACAGCCTAAAGACTCTTCCAGAAAGCATG GGTAACTTAAAATCTCTTCAAACTCTGAACGTTGCTGAGTGCTCACAACTTGAGAAATTGCCAGAGAGTTTGGGTGACATAGAATCCTTAACAGAATTGT TTACAAAGGGTACTTCGATTAAGCAACTTCCTACTTCAGCTAGATATTTGAAGAAGCTGACAAAGTTATCATTTGGTGGATACAACAAAGTTTTCTACTC ACCTGATCTACCATCTAAATCTTGGTTTTCAAGATTTTCATCGTGGCTTTCACCACAAAGCTGTTCTTGCTCCATAGATATGCTACCTGCTTCTTTCACT AGTTTCAGCTCATTGAAAGAACTAAATCTAAGTTATTCTGGTTTGTCTGAAGCTACAAGTTCCATTGATCTTGGGAGTTTGTGCTTTCTTGAAAATTTGA ATTTGTCTGGACATGAATTCTTCAATCTGCCTTCTAGCATTAGCCGCCTTTCTAAGCTTCAATTTTTGACGGTTGAGAGATGCTCGAATCTTCTATCAAT CTCAGAGCTTCCATCAAGTGTACTGTTCTTGTCTATCAATGACTGCACATCCATTGAAAGAGTAAGGGCACCACTTCAGCATGAAAGACTACCATTACTG AATGTAAAAGGGTGCCGAAATTTAATAGAGATTCAGGGTATGGAATGTGCGGGCAATAACTGGTCCATTTTGAACTTAAATGGCTGCAACAATTTATCTG AAAACTATAAGATGAGTCTCATTCAGGGATTATGCAAAGGTAAACATTATGATATTTGCCTTGATGGTGGTGAGATACCAGAATGGTTCAGCCATCGTGG AGAAGGATCTGCATTATCATTTCATTTTTCAGTTCCAGATGGTAACAAACTCCAAGCGCTGCTTCTTTGGGTTGTACTCTCGGCCTCCACCAATGAAGCC ACTCGAGAATCATCATTTCTCCAGTTTGATATGTGTGTTGCTACTTTCAAAAATAAGAGCAATGGTATTGAATTGTTTGAGACGATGGCGGCAGTTACGT TTGACAGAACTATCACGAAGCATTCTTGGATACAGCATATACCGTTGATTGGGTTAGAGGAATCGCTGCAAGGTGTAGAGGAATTGGAAGTGAATGTCAA AATAAGCTTATATGATGTTCCAAAATGTTGGGTAGAAAAATGTGGGGTACATTTGATAATGGAAAAGAATAAAGCAGATTCAGATCAGGAGATTGATATT AATGCTCTAGGCTCTGATGATCAGCTGTTGGAAAGTAGTTTGACAAGAGAGTTGCAGAAATGGAAAATCACCGGTTGCAGTAAATTTGGATAG
AA sequence Show only first row Show all	>Potri.T005501.1 pacid=42784401 polypeptide=Potri.T005501.1.p locus=Potri.T005501 ID=Potri.T005501.1.v4.1 annot-version=v4.1 MASTCSESPFFSSSSSSRHRWNYDVFLSFRGKDTRKNFTDHLYTALIQAGIHTFRDDNELPRGEEISPQLVKAIEGSRISIVVFSKQYASSRWCLDELVK IVECRQKIDQVVLPIFYDTEPSDVRKQTGSYAKAFDEHEEHFKEEMEKVNKWRGALAEAGNLSGWGLNNEANGYEAEFIKRIVSDVACKLGNKTLHVAKH PVGIYSRVQGIISLLKGAKPDVGIVGIHGIAGIGKTTIAKAVFNKLYFGFEGSSFLLDVKEISDKPNGLVELQERLLHDILKPNVWKLSNVYEGMNLIKE RLHRKKILVVFDDVDKREQLEALMGERCWFGAGSIIIVVTKNKHLLAEVGVDEMYHAKELDRDQSLQLFSLHAFRETHPAKNYEELSGKVVDYCKGLPLA LQILGSHLSIRDKAGWEIDIAHWKNTPHDDIQGKLRVSFDALNVDTSEIFLDIACYFVGRDKEYVADIVGARYDCHPEVAFRTLIGRSLITIDTEKQNRL RMHDILRKMGREIIRQRSRNRPGNCSRIWLPKDAYNVLSKEMGTDAVEGLALDVQESFNTKSFTKMRRLKLLQINEAHLVGSYSLLPKELIWLCWSRCPL KSLPSDFHLNDLVILDMQESKVRKLWKGTKILTKLKILNLSSCPYLAKTPNFQGLSSLERLILTGCPSLVEVHQSIGNLKSLVLLNLVYCDSLKTLPESM GNLKSLQTLNVAECSQLEKLPESLGDIESLTELFTKGTSIKQLPTSARYLKKLTKLSFGGYNKVFYSPDLPSKSWFSRFSSWLSPQSCSCSIDMLPASFT SFSSLKELNLSYSGLSEATSSIDLGSLCFLENLNLSGHEFFNLPSSISRLSKLQFLTVERCSNLLSISELPSSVLFLSINDCTSIERVRAPLQHERLPLL NVKGCRNLIEIQGMECAGNNWSILNLNGCNNLSENYKMSLIQGLCKGKHYDICLDGGEIPEWFSHRGEGSALSFHFSVPDGNKLQALLLWVVLSASTNEA TRESSFLQFDMCVATFKNKSNGIELFETMAAVTFDRTITKHSWIQHIPLIGLEESLQGVEELEVNVKISLYDVPKCWVEKCGVHLIMEKNKADSDQEIDI NALGSDDQLLESSLTRELQKWKITGCSKFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T005501 [exp]	0	1

Compare expression of checked genes

Potri.T005501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.