Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT4G27220	314 / 1e-89		NB-ARC domain-containing disease resistance protein (.1)
AT4G10780	283 / 2e-79		LRR and NB-ARC domains-containing disease resistance protein (.1)
AT4G27190	276 / 2e-76		NB-ARC domain-containing disease resistance protein (.1)
AT1G12220	261 / 5e-72	RPS5	RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G12290	259 / 8e-72		Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G12210	258 / 3e-71	RFL1	RPS5-like 1 (.1)
AT5G43740	249 / 1e-68		Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G61180	249 / 2e-68		LRR and NB-ARC domains-containing disease resistance protein (.1.2)
AT5G63020	245 / 6e-67		Disease resistance protein (CC-NBS-LRR class) family (.1)
AT1G61300	242 / 8e-67		LRR and NB-ARC domains-containing disease resistance protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.019G011169 [exp]	1349 / 0	AT4G27220	301 / 5e-86	NB-ARC domain-containing disease resistance protein (.1)
Potri.019G011826 [exp]	1249 / 0	AT4G27220	314 / 2e-90	NB-ARC domain-containing disease resistance protein (.1)
Potri.019G020500 [exp]	1140 / 0	AT4G27220	326 / 2e-95	NB-ARC domain-containing disease resistance protein (.1)
Potri.T023966 [exp]	1055 / 0	AT4G27220	307 / 2e-89	NB-ARC domain-containing disease resistance protein (.1)
Potri.019G020102 [exp]	1045 / 0	AT4G27220	297 / 6e-85	NB-ARC domain-containing disease resistance protein (.1)
Potri.019G014380 [exp]	1043 / 0	AT4G27220	302 / 5e-87	NB-ARC domain-containing disease resistance protein (.1)
Potri.019G014372 [exp]	1036 / 0	AT4G10780	265 / 1e-73	LRR and NB-ARC domains-containing disease resistance protein (.1)
Potri.019G014312 [exp]	1026 / 0	AT4G27220	300 / 3e-86	NB-ARC domain-containing disease resistance protein (.1)
Potri.018G136301 [exp]	1025 / 0	AT4G27220	329 / 8e-97	NB-ARC domain-containing disease resistance protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10024173 [exp]	161 / 2e-39	AT3G14460	681 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10039540 [exp]	159 / 6e-39	AT3G14470	727 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Lus10005218 [exp]	139 / 1e-32	AT3G14470	379 / 2e-113	NB-ARC domain-containing disease resistance protein (.1)
Lus10022351 [exp]	135 / 2e-31	AT3G14470	369 / 1e-108	NB-ARC domain-containing disease resistance protein (.1)
Lus10039509 [exp]	131 / 3e-30	AT3G14460	613 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10014922 [exp]	130 / 4e-30	AT3G07040	523 / 1e-171	RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Lus10026132 [exp]	130 / 5e-30	AT3G14460	594 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10022900 [exp]	127 / 4e-29	AT3G14470	350 / 2e-104	NB-ARC domain-containing disease resistance protein (.1)
Lus10020016 [exp]	127 / 5e-29	AT3G07040	563 / 0.0	RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Lus10042117 [exp]	126 / 9e-29	AT3G14470	354 / 2e-105	NB-ARC domain-containing disease resistance protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0023 [poplar] [flax]	P-loop_NTPase	PF00931 [poplar] [flax]	NB-ARC	NB-ARC domain
CL0022 [poplar] [flax]	LRR	PF13855 [poplar] [flax]	LRR_8	Leucine rich repeat

Representative CDS sequence

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>Potri.T012000.3 pacid=42784425 polypeptide=Potri.T012000.3.p locus=Potri.T012000 ID=Potri.T012000.3.v4.1 annot-version=v4.1

ATGCTTCGACAGAATGATCCAGTTTTGCATCATGTTGACAGATCTTTTTGGGAATATGTTGAAAAGATGGATGATGGTCGCATGAGGTGTAAGTTTTGTG

GGCATTGTTTTGCCGAACGTACTTCCATTTCGAGGATCAAATTGCATTTAGCAGGAGTGACAGGCCGTGGTGTTAAAACTTGTGGACAAGTGCCTCCAGA

TGTCCAAGACGCAGCCCTTGCAGCAATTGATGGCCCTCAAGAAAAGAAACTTAAAACTTTAGCAGGCTCTAGCAATAATGATGTCACTAATGAAATTTCA

CCTTCAGCACAACAACAGAACAATGAAATGATGATGGCACGACAACGAGAAGATCTTTGGCTCGAAGATTTGGTGACTAGCATCACTGTTGAAGACATGG

AGCTTCTGGAGAGAGGTAGCTTTCATGAGAGGCCATCATTTTATCAAGCTGATGAGCCTCGAGGTGATCCATCCCAACCAACAAATGATCAACTCTGTTC

TCCATCAGTAAACAATGATGTCATCGTGAATGATGCACAGAACGTATTTCGAGTGAGGACAGAACCAGTGGTTCAGGTGTTGGAACAAAGCAATGCAGAA

CTTGAGAATTTGTCTGTGGATGCTGGAAGGACACAAGTGGGAGTTCAGGGCATGGAACATGGTTGGGAGGAAGAGAGAGTTTGTTCGCATTTAGACATGG

AAAATAGCATGGAAAACACTGGTGAAGGATCTGTCCAGCATGTTGACAGAATTGTCTCTCCTTGGAGACACGCGATTGATGAAAATTATAGTAGAAGAGG

TGCAATAGAAAGATTAGTGCAGCCTGGCGTAGGTGCAAGCTCTTCTGGAGGCAATGTGATTCATCATGGCATTTCAACCAGTCCACAAGAGCAAAACAAT

GAAGTCGACAATTTGACAGGAGATGCAACAAGGATACAAGCACCAGATATGTATGAAAAAAGCTTGCAGGAGATGCGTACTTTCTTAATGAAGGATGATA

TGGAGAGCAATAGTGGAAGATCATTGCAGCCTGGTGCAGGGGCACGCTCTTCTGTAGGCCTTAAACACAACACAAGTGAGACTAGAGGAGCTCCTTTACC

TACTGGCTCTACAAAGCTAGTGGGTCGAGCATTTGAAGAGAATAGGAAAGTGATATGGTCTTGGTTGATGGACGAAGAAGTCTCAACCATTGGTATTTAC

GGGATGGGGGGGGCTGGTAAAACCACAATGTTGAAACATATCTATAACGAGCTTCAACGAATTGCAAATATTTCTCCTCATGTTTACTGGGTGACCGTGT

CTCGAGATTTCAGCATTCATACATTGCAGAAGAAGATCGCAAAATGTATAAATTTATCTCTTTCCATCGAAGAGGAGGAGTTGCACATAGCTGTGAAATT

GTCACTAGAACTAAAAAAGAAACAAAGATGGATTTTAATTTTAGATGATTTGTGGAACTCCTTTGAGCTATACAAAGTGGGAATTCCTGTCTCATTAAAA

GAATGCAAGCTGATTATAACAACTCGATCAGAAACAGTTTGTCGACAGATGAATAGCAGAAACAATCTCAGAGTGAATCCTCTCTCTAATAAAGAAGCTT

GGACTTTGTTTACGGAGATACTTGGACATGACACACGACTTTCTCCAGAAGTAGAACAAATTGCAAAATTTATCACAAGGGAGTGTGATGGTTTGCCGCT

GGGAATTAAAACAATTGCTGGAACCATGAAGGGCGTAGATGACATCCACGAATGGAGCGATGCTTTGGAGGACCTCAGACAATCAAGAGTTATGCAAGAT

AAAGTGGAAGAGGAGGTATTTCATATATTGAGATTTAGTTACACCCACTTAAGTGATAGAGCTCTGCAACGATGTTTCTTGTATTGTGCATTATTTCCAG

AAGACTCTGCTATCAATAGACTGCAATTGATACGTTATTTGATTGATGAGGGAGTGGTAAAGGGGCAAAAGAGTAGGGAGGCAGGAATTAACAAAGGCCA

CACAATGCTTAATAGACTTGAAAATGTCTGTCTATTAGAAAGATTGCATGGTGGTGATTTTGTTAAGATGCATGACTTGATTAGGGACATGGCCATCCAA

AAGCTGCAAGAGAACTCTCAAGCCATTGTTGAAGCTGGTGAACAATTAGAAGAATTGCCGGATGCAGAGGAGTGGACTGAGAAACTTACGACCGTTTCAC

TAATGCACAACCGAATTGAAGAGATTTGTTCCAGCCATTCAGTGAGGTGTCCAAATCTGTCAACCTTATTGCTATGTAGTAATCATAGGTTGCGATTCAT

TGCGGGTTCATTTTTCGAGCAAATGCATGGGCTCAAGGTCCTCGATCTGTCTAACACAGCTATTGAATGTTTGCCTGATTCTGTCTCTGATTTGGTGGGT

CTCACTTCATTGTTGCTCAACAATTGTCAGAGGTTAAGCCGTGTACCATCATTGAAAAAGCTCAGGGCACTGAAGAGGTTAGATCTCTCTCGTACTCCAC

TTAAAAAGATTCCACATGGCATGAAATGTCTATCCAACCTGAGATATCTAAGAATGAATGGATGTGGTGAAAAGAAGTTTCCATGTGGGATAATACCTAA

ACTCTCTCACCTGCAAGTCTTGATACTAGAGGATTGGGTGGATAGGGTTCTTAATGATGGTAGAATGGGTAAGGAAATATATGCTGCAGTAATAGTTGAA

GGAAAGGAAGTAGGATGCTTGAGGAAGTTGGAGAGTTTGGAATGCCATTTTGAAGATCGCTCTAACTACGTGGAGTACCTCAAATCTCGGGATGAGACCC

AATCACTAAGAACATACAAAATTGTTGTAGGACAGTTCAAGGAAGATGAAGGTTGGGAATTTAAGTATAATCAGAAAAGTAACATAGTTGTTTTGGGTAA

TTTGAATATCAATAGAGATGGAGATTTTCAGGTCATCTCCTCAAATGACATTCAACAACTAATTTGTAAATGTATCGATGCGAGAAGTTTAGGCGATGTT

TTGTCATTAAAGTATGCAACTGAACTGGAGTATATCAAGATTTTGAATTGCAATAGCATGGAGAGCTTGGTTTCATCTTCTTGGTTATGCTCTGCTCCAC

TACCACAGCCATCTCCATCTTGTAATGGTATATTTTCTGGTCTTAAACGGTTATATTGTTCTGGTTGTAAGGGTATGAAGAAGTTGTTCCCTCCTGTCTT

GCTGCCATACCTTGTAAACCTGGAAAGGATTGATGTTAAAGAATGTGAGAAAATGGAGGAGATAATAGGTGGAGCAATATCGGATGAAGAAGGGGATATG

GGTGAAGAAAGCAGCGTCAGAAACACCGAATTCAAACTCCCAAAGTTGAGAGAACTGCACTTGGGAGATTTACCAGAACTAAAAAGCATTTGTAGTGCAA

AACTGATTTGCGATTCTCTCCGAGTAATTGAAGTACGGAATTGCAGTATCATAGAAGTCTTGGTTCCATCTTCTTGGATTCACCTTGTAAACCTGGTAGA

GATTGTTGTTGAAGGATGTGAGAAAATGGAGGAGATAATAGGTGGAGCAAGATCGGATGAAGAAGGGGATATGGGTGAAGAAAGCAGCGTCAGAAACACC

GAATTCAAACTCCCAAAGTTGAGAGAACTGCACTTGGGAGATTTACCAGAACTAAAAAGCATTTGTAGTGCAAAACTGATTTGCGATTCTCTCCGAGTAA

TTGAAGTACGGAATTGCAGTATCATAGAAGTCTTGGTTCCATCTTCTTGGATTCACCTTGTAAAACTGAAAAGGATTGATGTTAAAGAATGTGAGAAAAT

GGAGGAGATAATAGGTGGAGCAAGATCGGATGAAGAAGGGGATATGGGTGAAGAAAGCAGCGTCAGAAACACCGAATTCAAATTCCCAAAGTTGAGAGAA

CTGCACTTGGGAGATTTACCAGAACTAAAAAGCATTTGTAGTGCAAAACTGATTTGCGATTCTCTTCAAGTAATTGAAGTACGGAATTGCAGTATCATAG

AAGTCTTGGTTCCATCTTCTTGGATTCACCTTGTAAACCTAGAAGAGATTATTGTTAATGGATGTGAGAAAATGGAGGAGATAATAGGTGGAACAAGATC

GGATGAAGAAGGGGATATGGGTGAACAAAGCAGCATCAGAAACACCGAATTCAAACTCCCAAAGTTGAGAGAACTGCACTTGGGAGATTTACCAGAACTA

AAAAGCATTTGTAGTGCAAAACTAATTTGCGATTCTCTCCAAAAAATTGAAGTACGGAATTGCAGCATCAGAGAAATCTTGGTTCCATCTTCTTGGATTG

GCCTTGTAAACCTAGAAGAGATTGTTGTTGAAGGATGTGAGAAAATGGAGGAGATAATAGGTGGAGCAAGATCGGATGAAGAAGGGGTTATGGGTGAAGA

AAGCAGCATCAGAAACACCGAATTCAAACTCCCAAAGTTGAGACACCTGTACTTGAAAAATTTACTAGAACTAAAAAGCATTTGTAGTGCAAAACTGATT

TGCGATTCTCTCGAAGTAATTGAAGTATGGAATTGCAGTATCAGAGAAATCTTGGTTCCATCTTCTTGGATTCGCCTTGTAAAGCTAAAAGTGATTGTTG

TTGGAAGATGTGTGAAAATGGAGGAGATAATAGGTGGAACAAGATCGGATGAAGAAGGGGTTATGGGTGAAGAAAGCAGCAGCAGCACTGAACTGAACTT

CCCACAGTTAAAAACTCTGAAATTGATTTGGTTACCAGAACTCAGAAGCATCTGTAGTGCAAAACTGATTTGCGATTCTATGAAATTAATTCATATAAGA

GAATGTCAGAAGCTGAAGAGAATGCCAATTTGTCTTCCGTTGCTTGAAAATGGCCAGCCATCTCCTCCCTCTTTTCTTAGAGATATCTATGCAACGCCCA

AAGAATGGTGGGAGTCAGAAGTGGAGTGGGAGCATCCTAACACCAAGGATGTCCTTCGTCGTTTCGTAAGGTTTGGATAA

AA sequence

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>Potri.T012000.3 pacid=42784425 polypeptide=Potri.T012000.3.p locus=Potri.T012000 ID=Potri.T012000.3.v4.1 annot-version=v4.1

MLRQNDPVLHHVDRSFWEYVEKMDDGRMRCKFCGHCFAERTSISRIKLHLAGVTGRGVKTCGQVPPDVQDAALAAIDGPQEKKLKTLAGSSNNDVTNEIS

PSAQQQNNEMMMARQREDLWLEDLVTSITVEDMELLERGSFHERPSFYQADEPRGDPSQPTNDQLCSPSVNNDVIVNDAQNVFRVRTEPVVQVLEQSNAE

LENLSVDAGRTQVGVQGMEHGWEEERVCSHLDMENSMENTGEGSVQHVDRIVSPWRHAIDENYSRRGAIERLVQPGVGASSSGGNVIHHGISTSPQEQNN

EVDNLTGDATRIQAPDMYEKSLQEMRTFLMKDDMESNSGRSLQPGAGARSSVGLKHNTSETRGAPLPTGSTKLVGRAFEENRKVIWSWLMDEEVSTIGIY

GMGGAGKTTMLKHIYNELQRIANISPHVYWVTVSRDFSIHTLQKKIAKCINLSLSIEEEELHIAVKLSLELKKKQRWILILDDLWNSFELYKVGIPVSLK

ECKLIITTRSETVCRQMNSRNNLRVNPLSNKEAWTLFTEILGHDTRLSPEVEQIAKFITRECDGLPLGIKTIAGTMKGVDDIHEWSDALEDLRQSRVMQD

KVEEEVFHILRFSYTHLSDRALQRCFLYCALFPEDSAINRLQLIRYLIDEGVVKGQKSREAGINKGHTMLNRLENVCLLERLHGGDFVKMHDLIRDMAIQ

KLQENSQAIVEAGEQLEELPDAEEWTEKLTTVSLMHNRIEEICSSHSVRCPNLSTLLLCSNHRLRFIAGSFFEQMHGLKVLDLSNTAIECLPDSVSDLVG

LTSLLLNNCQRLSRVPSLKKLRALKRLDLSRTPLKKIPHGMKCLSNLRYLRMNGCGEKKFPCGIIPKLSHLQVLILEDWVDRVLNDGRMGKEIYAAVIVE

GKEVGCLRKLESLECHFEDRSNYVEYLKSRDETQSLRTYKIVVGQFKEDEGWEFKYNQKSNIVVLGNLNINRDGDFQVISSNDIQQLICKCIDARSLGDV

LSLKYATELEYIKILNCNSMESLVSSSWLCSAPLPQPSPSCNGIFSGLKRLYCSGCKGMKKLFPPVLLPYLVNLERIDVKECEKMEEIIGGAISDEEGDM

GEESSVRNTEFKLPKLRELHLGDLPELKSICSAKLICDSLRVIEVRNCSIIEVLVPSSWIHLVNLVEIVVEGCEKMEEIIGGARSDEEGDMGEESSVRNT

EFKLPKLRELHLGDLPELKSICSAKLICDSLRVIEVRNCSIIEVLVPSSWIHLVKLKRIDVKECEKMEEIIGGARSDEEGDMGEESSVRNTEFKFPKLRE

LHLGDLPELKSICSAKLICDSLQVIEVRNCSIIEVLVPSSWIHLVNLEEIIVNGCEKMEEIIGGTRSDEEGDMGEQSSIRNTEFKLPKLRELHLGDLPEL

KSICSAKLICDSLQKIEVRNCSIREILVPSSWIGLVNLEEIVVEGCEKMEEIIGGARSDEEGVMGEESSIRNTEFKLPKLRHLYLKNLLELKSICSAKLI

CDSLEVIEVWNCSIREILVPSSWIRLVKLKVIVVGRCVKMEEIIGGTRSDEEGVMGEESSSSTELNFPQLKTLKLIWLPELRSICSAKLICDSMKLIHIR

ECQKLKRMPICLPLLENGQPSPPSFLRDIYATPKEWWESEVEWEHPNTKDVLRRFVRFG

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T012000 [exp]	0	1

Potri.T012000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T012000 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T012000 coexpression network