Plant FIBer expression Database

Potri.T045000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27220 322 / 1e-94 NB-ARC domain-containing disease resistance protein (.1)
AT4G27190 307 / 1e-88 NB-ARC domain-containing disease resistance protein (.1)
AT4G10780 287 / 4e-82 LRR and NB-ARC domains-containing disease resistance protein (.1)
AT1G12280 269 / 8e-76 LRR and NB-ARC domains-containing disease resistance protein (.1)
AT5G63020 268 / 2e-75 Disease resistance protein (CC-NBS-LRR class) family (.1)
AT5G47250 265 / 9e-75 LRR and NB-ARC domains-containing disease resistance protein (.1)
AT5G43740 260 / 4e-73 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G12210 260 / 6e-73 RFL1 RPS5-like 1 (.1)
AT1G61180 260 / 7e-73 LRR and NB-ARC domains-containing disease resistance protein (.1.2)
AT5G43730 259 / 1e-72 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G136700
[exp]
1365 / 0 AT4G27190 323 / 4e-94 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G135600
[exp]
1332 / 0 AT4G27220 338 / 7e-100 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G145578
[exp]
1266 / 0 AT4G27220 311 / 3e-91 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G145572
[exp]
1195 / 0 AT4G27220 279 / 4e-80 NB-ARC domain-containing disease resistance protein (.1)
Potri.T045200
[exp]
1184 / 0 AT4G27220 348 / 1e-104 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G137900
[exp]
1170 / 0 AT4G27220 354 / 4e-106 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G136301
[exp]
1157 / 0 AT4G27220 329 / 8e-97 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G145566
[exp]
1125 / 0 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1)
Potri.T023966
[exp]
1123 / 0 AT4G27220 307 / 2e-89 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039540
[exp]
162 / 3e-40 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Lus10024173
[exp]
159 / 2e-39 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10039509
[exp]
147 / 2e-35 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10026132
[exp]
143 / 4e-34 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10014922
[exp]
142 / 5e-34 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Lus10042117
[exp]
141 / 1e-33 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1)
Lus10026109
[exp]
139 / 5e-33 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Lus10022792
[exp]
138 / 9e-33 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1)
Lus10005321
[exp]
138 / 1e-32 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10016316
[exp]
136 / 3e-32 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00931 NB-ARC NB-ARC domain
CL0022 LRR PF13855 LRR_8 Leucine rich repeat
Representative CDS sequence
>Potri.T045000.1 pacid=42784409 polypeptide=Potri.T045000.1.p locus=Potri.T045000 ID=Potri.T045000.1.v4.1 annot-version=v4.1
ATGGTTCTGCCAAAGGGTCCATTTTGGGAGTATGTTAAGGAGACTGGTGAAAGTAGGCAGTGTACGTTTTGTGGGCATCCATTCTCCAAGCAAACTCCGA
TTACCAGGTTCAAGCTTCATTGGTCAGGAGTTCAAAGGCGTGGAACTACAATTTGTGACAAAGTGCCAGAACCTGTTCGAGACGCAGCTTTCACTGCTGT
TGATGGTCCTCCAGAAAAGAAACTTAAAACCACAGCTACGTCAAGCAATGATGGGGCACACAATACAATTTCAACTTCTTTGCTAGAAAAAAACATTCAA
GTTGGAAATGTAGTGACCGATGTAGAAACGGAGCCAGAATTGTATTTTCCCTCACTTGGAGACCTGATCCCTGGTGAACAAGTGGAGCAAGAGTGTGAAA
GAAATGCTCAGGACAACTTACCTTTGTCCGTGGAGGATTATAGGATTGAGGGCATGATCATGGAATTGAACCAGCTTGTTGTGAGAGGTGGCTCTCCTGA
GAGGCTTACAGTTAATGAAGATGAGCCTAGAGGAGATTTGTCCCAACCAACAGATCCACTGTGTTTTGGCCTTGAAAGGCATTATGATCAACCATCTTCT
TCCTCAGTCAACAATGATGTCATGATGATTGATGTGGAGAATATGATCAGAGAACATTTGCAGCCTGTTGTGAGAGATAGCTCTCGTGAAGGTCTTCAAC
CTATCGGCGATGAGAGCGGACGAGATGTGTTTCTAACTGAAGAACTAAGAGGTGGAGAGTTTGAAAATAATAAGAATGCTATCTGGTCGTGGGTAATGAA
TGATGAGGCCTCATCAAGTATTGGCATTTACGGGATGGGGGGTGTGGGCAAAACAACATTGCTCACACATATCTACAATCAGCTTCTACAAGAACGTGGC
ACTTTTCCTCATGTTCACTGGATCACGGTATCGCAGGATTTTAGTGTTTATAAATTGCAGAATCTTATTGCAAGACGCATTGATTTAGATCTCTCAAAAG
AAGACTGCGAGAGGACAAGGGCTGCAAAACTGTCAAAAGCATTAATTGAGAAACAACGGTGGGTTCTCATTTTAGATGATTTGTGGAACTGTTTTGATTT
TGATGAGGTGGGTATTCCTATCAAAGTGAAGGGATGCAAACTAATTCTTACAACTCGATCATTTGAAGTTTGTAAGCGGATGGTCTGCCAGGAGAAAATC
AAAGTGGAGCCTCTTTCAATGGAAGAAGCTTGGGCTCTGTTCATGAAGATACTTGGATGTATTCCTCCAGAAGTGGAAGAAATTGCAAAATCTATGGCAA
GTGAATGTGCTGGTTTGCCTCTAGGAATTAAAACAATGGCCGGAACCATGAGGGGAGTGGATGATATATGTGAGTGGAGGAATGCTTTAGAGGAACTGAA
ACAATCAAGAGTTTGGCTGGAGGACATGGATGAGAAGGTATTCCAAATATTAAGATTTAGTTATATGCACTTAAAGGAGTCAGCACTGCAACAATGTTTC
TTGCACTGTGCATTATTCCCGGAAGACTTTCAGATCCCTAGAGAGGATTTGATAGCTTATTTGATTGATGAGGGAGTGATAAAAGGGCTGACGAGGAGGG
AGGCAGAATTTGACAAAGGCCACACGATGCTTAATAAACTTGAAAGTGCCTGCCTTTTGGAAGATGCTAAATTGTACAGTGGTCGTAGATGTGTTCGTGC
TGTCAAGATGCATGACTTGATTAGGGACATGGCCATCCAAATACTACAAGAGAACTCTCAAGGCATGGTCAAAGCAGGTGCACAGTTAAGAGAATTGCCG
GGTGCAGAGGAGTGGACAGAGAATCTTACTAGAGTTTCACTAATGCAAAACCAAATTAAAGAAATTCCTTTCAGCCATTCACCGAGGTGTCCCAGTCTTT
CAACTCTATTGCTATGCAGGAACCCAAAGTTGCAATTTATTGCAGATTCATTTTTTGAGCAGTTGCATGGGCTCAAGGTTCTTGATCTGTCCTATACAGG
TATCACAAAACTACCTGATTCTGTCTCTGAATTGGTGAGTCTCACTGCATTACTGCTCATTGATTGTAAGATGTTAAGGCATGTACCGTCATTAGAAAAG
CTCAGGGCACTGAAGAGGTTAGATCTCTCTGGTACTTGGGCACTTGAAAAGATTCCTCAAGGCATGGAATGTCTATGCAACCTGAGGTATCTTATAATGA
ATGGATGTGGTGAAAAGGAGTTTCCTAGTGGGTTGTTACCAAAGCTCTCTCACCTGCAAGTCTTTGTATTGGAGGAGTGGATTCCTCGTCCTACCGGAGA
TTATAGAGAAAGACAAGATGCTCCGATAACTGTTAAAGGAAAGGAAGTGGGTTGCTTGAGGAAGTTGGAAAGTTTGGCATGCCATTTTGAAGGTTGCTCA
GACTACATGGAGTATCTCAAATCTCAGGATGAAACCAAATCACTAACCACATACCAAATTCTTGTAGGACCACTGGATAAGTATGATTATTGTTATTGTT
ATGGTTATGATGGTTGCAGAAGGAAAGCAATTGTTAGGGGTAACTTGAGTATCGACAGAGATGGAGGTTTTCAGGTCATGTTTCCAAAGGACATTCAACA
ATTGAGTATTCATAATAATGATGATGCAACAAGTTTATGCGATTTTTTATCTCTAATAAAGAGTGTAACTGAACTGGAGGCTATCACGATTTTTAGTTGC
AATAGCATGGAGAGCTTGGTTTCATCTTCTTGGTTCCGCTCTGCTCCACTACCATCTCCATCTTACAACGGTATATTTTCTAGTCTTAAGAAGTTCTTTT
GCTCTGGATGTAGTAGTATGAAGAAGTTGTTCCCTCTTGTCCTGCTGCCAAACCTTGTAAAATTAGAAGAGATTACAGTTACAAAATGTGAGAAGATGGA
GGAGATAATAGGTGGAACAAGATCAGACGAAGAAGGGGTTATGGGTGAAGAAAGCAGCAGCAGCAGCATCACCGATCTCAAACTCACAAAATTAAGTTCT
CTAACATTGATTGAATTACCAGAACTGGAAAGCATTTGTAGTGCAAAACTGATTTGCGATTCTCTCAAAGAGATTGCAGTTTATAATTGTAAGAAGCTGA
AAAGGATGCCAATTTGTCTTCCGTTGCTTGAAAATGGCCAGCCATCTCCTCCCCCTTCTCTTAGAAAAATTGAGGTATATCCAGAAGAATGGTGGGAGTC
AGTAGTGGAGTGGGAGCATCCTAACGCTAAGGATGTCCTTCGTCCCATTGTACAGTTCTAG
AA sequence
>Potri.T045000.1 pacid=42784409 polypeptide=Potri.T045000.1.p locus=Potri.T045000 ID=Potri.T045000.1.v4.1 annot-version=v4.1
MVLPKGPFWEYVKETGESRQCTFCGHPFSKQTPITRFKLHWSGVQRRGTTICDKVPEPVRDAAFTAVDGPPEKKLKTTATSSNDGAHNTISTSLLEKNIQ
VGNVVTDVETEPELYFPSLGDLIPGEQVEQECERNAQDNLPLSVEDYRIEGMIMELNQLVVRGGSPERLTVNEDEPRGDLSQPTDPLCFGLERHYDQPSS
SSVNNDVMMIDVENMIREHLQPVVRDSSREGLQPIGDESGRDVFLTEELRGGEFENNKNAIWSWVMNDEASSSIGIYGMGGVGKTTLLTHIYNQLLQERG
TFPHVHWITVSQDFSVYKLQNLIARRIDLDLSKEDCERTRAAKLSKALIEKQRWVLILDDLWNCFDFDEVGIPIKVKGCKLILTTRSFEVCKRMVCQEKI
KVEPLSMEEAWALFMKILGCIPPEVEEIAKSMASECAGLPLGIKTMAGTMRGVDDICEWRNALEELKQSRVWLEDMDEKVFQILRFSYMHLKESALQQCF
LHCALFPEDFQIPREDLIAYLIDEGVIKGLTRREAEFDKGHTMLNKLESACLLEDAKLYSGRRCVRAVKMHDLIRDMAIQILQENSQGMVKAGAQLRELP
GAEEWTENLTRVSLMQNQIKEIPFSHSPRCPSLSTLLLCRNPKLQFIADSFFEQLHGLKVLDLSYTGITKLPDSVSELVSLTALLLIDCKMLRHVPSLEK
LRALKRLDLSGTWALEKIPQGMECLCNLRYLIMNGCGEKEFPSGLLPKLSHLQVFVLEEWIPRPTGDYRERQDAPITVKGKEVGCLRKLESLACHFEGCS
DYMEYLKSQDETKSLTTYQILVGPLDKYDYCYCYGYDGCRRKAIVRGNLSIDRDGGFQVMFPKDIQQLSIHNNDDATSLCDFLSLIKSVTELEAITIFSC
NSMESLVSSSWFRSAPLPSPSYNGIFSSLKKFFCSGCSSMKKLFPLVLLPNLVKLEEITVTKCEKMEEIIGGTRSDEEGVMGEESSSSSITDLKLTKLSS
LTLIELPELESICSAKLICDSLKEIAVYNCKKLKRMPICLPLLENGQPSPPPSLRKIEVYPEEWWESVVEWEHPNAKDVLRPIVQF

DESeq2's median of ratios [POPLAR]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T045000
[exp]
0 1

Potri.T045000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.