Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT3G14470	585 / 0		NB-ARC domain-containing disease resistance protein (.1)
AT3G14460	475 / 4e-144		LRR and NB-ARC domains-containing disease resistance protein (.1)
AT3G50950	206 / 2e-54	ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (.1.2)
AT1G59218	195 / 1e-50		Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G58848	195 / 1e-50		Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G58807	187 / 4e-48		Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G58602	187 / 5e-48		LRR and NB-ARC domains-containing disease resistance protein (.1.2)
AT4G27220	183 / 6e-47		NB-ARC domain-containing disease resistance protein (.1)
AT1G58390	176 / 1e-44		Disease resistance protein (CC-NBS-LRR class) family (.1)
AT5G17680	169 / 5e-42		disease resistance protein (TIR-NBS-LRR class), putative (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G200500 [exp]	2018 / 0	AT3G14470	594 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.T127106 [exp]	2007 / 0	AT3G14470	594 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.T126706 [exp]	2004 / 0	AT3G14470	565 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.003G200200 [exp]	1662 / 0	AT3G14470	634 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.T126506 [exp]	1634 / 0	AT3G14470	575 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.T126806 [exp]	1569 / 0	AT3G14470	587 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.005G007001 [exp]	1051 / 0	AT3G14470	647 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.001G029300 [exp]	922 / 0	AT3G14470	676 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.003G200800 [exp]	903 / 0	AT3G14460	509 / 7e-157	LRR and NB-ARC domains-containing disease resistance protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10024173 [exp]	898 / 0	AT3G14460	681 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10039509 [exp]	871 / 0	AT3G14460	613 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10007261 [exp]	794 / 0	AT3G14460	654 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10039540 [exp]	794 / 0	AT3G14470	727 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Lus10016316 [exp]	722 / 0	AT3G14470	494 / 6e-156	NB-ARC domain-containing disease resistance protein (.1)
Lus10005321 [exp]	585 / 0	AT3G14460	607 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10026109 [exp]	563 / 3e-177	AT3G14470	598 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Lus10026132 [exp]	547 / 1e-169	AT3G14460	594 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10005218 [exp]	385 / 1e-113	AT3G14470	379 / 2e-113	NB-ARC domain-containing disease resistance protein (.1)
Lus10002736 [exp]	354 / 5e-110	AT3G14470	317 / 1e-98	NB-ARC domain-containing disease resistance protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0023 [poplar] [flax]	P-loop_NTPase	PF00931 [poplar] [flax]	NB-ARC	NB-ARC domain

Representative CDS sequence

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>Potri.T126306.1 pacid=42772953 polypeptide=Potri.T126306.1.p locus=Potri.T126306 ID=Potri.T126306.1.v4.1 annot-version=v4.1

ATGTTCATGGCGTCTTCTTCTTCTTCTTCGTCTAGACCTGGTTGGGTTTACGATGTATTTCTAAGTTTTAGAGGTGAAGATACTCGCAAAAATTTTACGG

ATCATCTTTTCACTGCTTTACAGAAAGCAGGAATCCGTACATTTCGAGATGACGACGAACTTCGTATAGGTGAAGAAATCTCCTTCCAACTCCCCAAAGC

AATACAAGAATCCAAGATTTCTATAGTGGTTTTCTCCAAGGGCTATGCTTCCTCCACTTGGTGTCTTGATGAACTTGAAAAGATTCTTGATTGCAGACAA

CCAACTGGTCAGATTGTTCTACCTGTTTTCTATGATATCGATCCTTCTGATATTAGAAAACAGACGGGGAGTTTTGCTGAAGCCTTTGATAGACATGAAG

AACGTTTTAAGGAAGAAATGGAGAAGGTCCAAAAGTGGAGAAAAGCTCTTGTGGAGGCTGCAAATATATCTGGGTTGGATCTTCGCAGTTTCGCAAATGG

GCATGAATCAAAATTAATTCAAAAGATTGTTGAAGAAGTTTCTAGTAAACTGAATCCCAGATTTTTGTTTGACGATATGCCGCTGAAGAGGTTGAAGACA

ACAATGATATCTGGCAGTGGGCTGCTTGACGATGCTGAGGAGAAGCAGATAACAAATAGAGCTGTGCGGGATTGGCTGGTCGAGTATAAAGACGCTGTCT

ATGAAGCCGACGACTTCTTGGATGAGATTGCTTATGAAGCTCTACGGCAGGAGTTGGAAGCTGAAGCTCAAACCTTCATTAAACCACTTGAAATAATGGG

GTTGAGAGAGATAGAAGAAAAATCAAGAGGCCTCCAGGAGAGTCTAGATTACTTAGTAAAACAAAAGGATGCCCTTGGTTTGATCAACCGCACTGGAAAA

GAACCATCATCGCCTAAAAGACGAACAACTTCTCTGGTGGATGAACGTGGTGTTTATGGTAGAGGTGATGACAGGGAAGCAATACTGAAGTTGCTTCTAT

CAGATGATGCAAATGGACAAAACCTAGGTGTCGTTCCCATAGTGGGAATGGGCGGGGTTGGTAAAACCACGCTCGCTCAGCTTGTATACAATCACAGCAG

AGTACAAGAGCGGTTCGGTCTCAAAGCTTGGGTTTGTGTTTCAGAAGATTTCAGTGTTTCGAAGTTAACCAAGGTTATCCTTGAGGGGTTCGGTTCATAC

CCTGCTTTTGATAATCTGGATAAGCTCCAGCTTCAGTTGAAGGAGAGATTACAGGGAAATAAATTCTTGCTTGTTTTAGATGACGTTTGGAATGAAGATT

ATGATGAATGGGATAGGTTTCTTACCCCCCTGAAGTACGGAGCAAAAGGGAGTATGATTCTTGTCACAACACGCAATGAAAGTGTAGCATCTGTCACGAG

AACTGTTCCAACTCATCATCTAAAAGAATTGACGGAAGACAACTGCTTGCTCGTGTTCACCAAACATGCATTTCGTGGTAAAAATCCCAATGATTATGAA

GAGTTGCTACAGATTGGAAGAGAAATAGCGAAAAAGTGTAAAGGCCTTCCTCTAGCTGCAAAAACACTCGGAGGTCTGCTACGCACCAAAAGAGATGTTG

AGGAGTGGGAGAAGATATTGGAAAGCAATCTATGGGATTTACCCAAAGGCAATATCCTCCCAGCCTTGAGATTAAGTTATCATTATCTCCCGCCACATCT

GAAGCAGTGTTTTGCTTATTGTGCCATATTTCCAAAAGACTATTTATTTGAAAAGGATGAATTAGTGCTCCTGTGGATGGCAGAGGGCTTCTTAGTCCGC

TCCGTAGATGATGAGATGGAAAGAGCAGGTGCTGAGTGCTTTGATGATCTCTTGTCAAGGTCGTTTTCCCAGCAATCAAGCTCATTATTTGTGATGCACG

ATCTCATGCATGACTTGGCTACCCATGTGTCCGGTCAATTTTGCTTCAGCTCCAGGTTGGGGGAAAATAATTCTTCCGAGGGCACCAGAAGGACTCGACA

TTTATCACTCGTAGTCGATACGGGAGGCGGTTTTTCAAGCACAAAATTAGAAAACATCCGTGAAGCCCAACATCTACGCACATTCCAAACTTTAACTTTT

GTAAATGGTGGTCCTTCTCCTGATTTTTATATTGAGATCTTTCATATATTGTCAAAACTTGGGCGCCTACGTGTGCTATCCTTGTCTAACTTTGCCGGTG

CAGATAAGCTGCTTTGGTCAACTAGCAAGTTGAAGCATTTGCGGTATTTGGATCTCTTTGGGTCAAATTTAGTAACGTTGCCTGAAGAAGTGAGTGCTCT

TCTCAATTTGCAAACGTTGATCTTGCAAGAGTGCTCCGAACTTGCTAGTCTACCTTATCTTGGAAATTTGAAGCACTTACGACATCTGAATCTTGAAGGA

ACAGGAATCGAAAGGTTGCCTGCATCTCTGGAAAGGTTAACCAACTTGCGGTATCTTAACATCTCAGACACGCCTTTGAAAGAGATGCCACCACATATAG

GTCAACTGGCAAAGCTCCGAACGTTGACTCACTTTCTCGTGGGAAGACAGAGTGAGACTAGCATTAAAGAATTGGGAAAGCTACGACATCTACGGGGAGA

ACTTCATATTGGGAACCTTCAAAATGTGGTGGATGCACGGGATGCAGCTGAGGCAAATTTGAAAGGTATAAAGCACCTTGATAAGCTGAGGTTTACATGG

GATGGTGACACTCATGACCCGCAACACGTAACAAGCACACTTGAGAAATTAGAGCCAGATGGAAATGTGAAGTATCTTGAGATTGATGGTTATGGAGGTC

TAAGGTTTCCGGAGTGGGTAGGAAAGTCCTCTTTCTCAAGAATAGTGTCCTTGGAGCTCAGTAGATGTACAAACTGCACCTCCTTACCACCGCTCGGGCA

ATTAGCTTCTTTAGTGCGTCTCTCCATTGAAGGATTCGATAAAGTTGAGACCGTGGACTCTAAGTTCTATGGGAATTGTACTGCTATGAAGAAGCCATTT

AAATCCCTCAAAACATTATCTTTTAGAAGGATGCCAGAGTGGCGCGAGTGGATTTCAGACGAAGGCAGCCAGGAAGCCTTCCCTCTTCTTGAGTTTCTTT

CAATCAAAGAATGCCCCAACCTTACAAAGGCCCTACCTGGTCACAACCTTCCACGTGTAACAGAACTTAGAATTGAAGGATGTAGGCAGCTCGCGACTCC

ACTTCCTAGGTTTCCTAGGTTGCACTCTCTCAAAGTTTTTGGATCCACCTCCCTAGAGTCCCTACCCGAGGAAATTGATCAAATGGGTTGTTCACCCTCT

GATTTAGGGATTGAAATCAGCTTCTGCGCTTCTCTCAAATGCGTCGCCCTGGACTTGCTCCCCAAGTTAAAATCTCTTCGTATCTCTCACTGTCCAGATC

TCGAATCACTATGTGCACATGAAAGACCTCTCATTGATCTCAACTCTCTCCATTCTTTGATAATCTGCGGGTGCCTTAAATTAGTTTCATTTCCCAAAGG

AGGGTTACCTGCTCCAGTCTTGACACAACTTTACTTATATGATTGCAAAAACTTGAAGCAGTTGCCTGAGAGTATGCCTTCCCTCCTCCCATCCCTTAAC

CGTTTGGTAATACATGGTTGTTCAGAAGTTGAGTTGTGTCCAGAAGGGGGTTTTCCCTCCACATTACAATCACTTGATATCTGGAATTGCAACAAACTCA

TTGCTGGCCGCATGCAATGGGGCTTGCAAACGCTCCCTTCTCTTTCACACTTTACAATTGGTGAAGACGAAAATGTTGAATCCTTCCCTGAAGAGATGCT

TCTGCCCTCAAGTCTTACATCTCTTAAAATCTATAACCTAAAACACCTGAAATCTCTTGACTATAAGGGGCTTCAACACCTCACCTCTCTTAGAGAATTG

ACTATAAGTAACTGCCCTCTGATTGAGTCAATGCCAGAAGAAGGGTTGCCCTCCTCCCTTTCTTCTCTTGTAATTAACGGTTGTCCTATGCTGGGTGAAA

GTTGTGAAAGGGAGAAAGGTAAAGATTGGCCCTAG

AA sequence

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>Potri.T126306.1 pacid=42772953 polypeptide=Potri.T126306.1.p locus=Potri.T126306 ID=Potri.T126306.1.v4.1 annot-version=v4.1

MFMASSSSSSSRPGWVYDVFLSFRGEDTRKNFTDHLFTALQKAGIRTFRDDDELRIGEEISFQLPKAIQESKISIVVFSKGYASSTWCLDELEKILDCRQ

PTGQIVLPVFYDIDPSDIRKQTGSFAEAFDRHEERFKEEMEKVQKWRKALVEAANISGLDLRSFANGHESKLIQKIVEEVSSKLNPRFLFDDMPLKRLKT

TMISGSGLLDDAEEKQITNRAVRDWLVEYKDAVYEADDFLDEIAYEALRQELEAEAQTFIKPLEIMGLREIEEKSRGLQESLDYLVKQKDALGLINRTGK

EPSSPKRRTTSLVDERGVYGRGDDREAILKLLLSDDANGQNLGVVPIVGMGGVGKTTLAQLVYNHSRVQERFGLKAWVCVSEDFSVSKLTKVILEGFGSY

PAFDNLDKLQLQLKERLQGNKFLLVLDDVWNEDYDEWDRFLTPLKYGAKGSMILVTTRNESVASVTRTVPTHHLKELTEDNCLLVFTKHAFRGKNPNDYE

ELLQIGREIAKKCKGLPLAAKTLGGLLRTKRDVEEWEKILESNLWDLPKGNILPALRLSYHYLPPHLKQCFAYCAIFPKDYLFEKDELVLLWMAEGFLVR

SVDDEMERAGAECFDDLLSRSFSQQSSSLFVMHDLMHDLATHVSGQFCFSSRLGENNSSEGTRRTRHLSLVVDTGGGFSSTKLENIREAQHLRTFQTLTF

VNGGPSPDFYIEIFHILSKLGRLRVLSLSNFAGADKLLWSTSKLKHLRYLDLFGSNLVTLPEEVSALLNLQTLILQECSELASLPYLGNLKHLRHLNLEG

TGIERLPASLERLTNLRYLNISDTPLKEMPPHIGQLAKLRTLTHFLVGRQSETSIKELGKLRHLRGELHIGNLQNVVDARDAAEANLKGIKHLDKLRFTW

DGDTHDPQHVTSTLEKLEPDGNVKYLEIDGYGGLRFPEWVGKSSFSRIVSLELSRCTNCTSLPPLGQLASLVRLSIEGFDKVETVDSKFYGNCTAMKKPF

KSLKTLSFRRMPEWREWISDEGSQEAFPLLEFLSIKECPNLTKALPGHNLPRVTELRIEGCRQLATPLPRFPRLHSLKVFGSTSLESLPEEIDQMGCSPS

DLGIEISFCASLKCVALDLLPKLKSLRISHCPDLESLCAHERPLIDLNSLHSLIICGCLKLVSFPKGGLPAPVLTQLYLYDCKNLKQLPESMPSLLPSLN

RLVIHGCSEVELCPEGGFPSTLQSLDIWNCNKLIAGRMQWGLQTLPSLSHFTIGEDENVESFPEEMLLPSSLTSLKIYNLKHLKSLDYKGLQHLTSLREL

TISNCPLIESMPEEGLPSSLSSLVINGCPMLGESCEREKGKDWP

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T126306 [exp]	0	1

Potri.T126306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T126306 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T126306 coexpression network